| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2784 |
|---|
| Symbol | |
|---|
| ID | 6286203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 2895719 |
|---|
| End bp | 2897233 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642626355 |
|---|
| Product | Substrate-binding region of ABC-type glycine betaine transport system |
|---|
| Protein accession | YP_001900340 |
|---|
| Protein GI | 187929853 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGGCAT GGCTTGCGCT GGGCTGGCTG GCGAGCAGCG CATCGGCCTT CGCAGAACAA
CCACTGCGGA TCGGCTCAAA ACGCTTCACC GAGTCTTACG TGCTAGGCGA AATCCTCACG
CAGACCGCAA ACCCGCGCGG CCCCGCCGAA CACGTACCGG GCCTGGGCAA CACCGCCATC
GTCTTTGCCG CGCTCAGGAA CGGCAGCATC GACGTCTATC CGGATTACCT CGGCACTATC
GCCGCTGAAA TCCTCCACTT GCCCGCCGAC CAGGCAGCCA ATCCCGATCA AGCCGCGCTG
CTGGCCGACG TCAACCGCGG CCTTGCGCCG ATGGGCCTGG CGGCCGGCGT GCCGCTCGGC
TTTGAAGACG CCTACGCGCT GGCCATGCGC GAAGCCGATG CCGAGCGCGA ACACATCCGC
ACGCTGGCCG ACCTCGCCAC GCATCCGACG CTGCGGCTTG GCCTCTCGCA CGAATTTCTC
GGCCGCGCCG ATGGCTGGCC GGCGATTGTG CAGCGCTACA AACTGCCGCA GCCCCCGACA
GGCCTCGACC ACGGCGTTGC CTACGACGCG CTGCGCGCCA GCCAAGTCGA CGTGATCGAC
ATCTACTCCA CTGACGCCAA GATCCGCCGC GAACATCTGC GTGTGCTCGA CGACCCGGCG
CACGTCTTCC CGCGCTATGA CGCCGTGTTG CTTTACCGCG CCGACGTTGC GCAGCGGCAT
CCGGCGCAAT GGCAGGCGAT CAACACACTC GCGGGGCACA TCCAGCGCGA CGACATGGTG
GCAATGAATG CAGCGGTCGA ACTCGAGGGC CAGTCGTTCT CGCAAGCGGC GCGGCGGTTT
CTCGCTGGGC ATGGCAACGC GCCGGCTGCC ACACCGACCC GCGCGTTCTT CGCCCGGCTG
ACGGACGGCC TGGGGCGGCT CACGCAACGG CATCTCGTGC TGGTGGGCAT TTCCACCGGC
GTTGCCGTGC TGCTGGGCGT GCCGCTGGGC CTCGTGGCCG CGCGTCGCCC GATCAAGCAG
CCGATCCTTG CGATCGTGGG CGTGCTGCAG ACAATTCCGT CGCTGGCACT GCTGGCGATG
CTCATCCCCG TCGTCGGGTC GATTGGCGTC GTACCGGCCC TGATTGCGCT GGCGGTCTAT
GCGCTGTTGC CCATCGTGCG CAACACCATC GTTGGGCTGG AACAGGTACC CGACGGCCTG
CGCGATGCGG CATTGGCGCT GGGACTTACG CCGTCGCAAC GCACCCGCGT GGTGGATCTG
CCGCTGGCGC TGCCGGTCAT CCTCGCCGGC GTCAAAACCG CCGCGGTCAT CAGTGTGGGC
ACGGCGACCA TCGCTGCGTT CATCGGCGCC GGCGGCTATG GCGAGCGCAT CGCGACCGGG
CTCGCGCTGA ACGACAGCGC AACGCTGCTC GCAGGCGCCA TCCCCGCAGC AGTGCTGGCG
CTGCTCGTGC AGGCCGCGTT CGAGCTGGCC GAATGGCGGC TGCGCCGGCG CAGCGGCAGC
ACCCCACCGC GCTAA
|
|---|
| Protein sequence | MLAWLALGWL ASSASAFAEQ PLRIGSKRFT ESYVLGEILT QTANPRGPAE HVPGLGNTAI
VFAALRNGSI DVYPDYLGTI AAEILHLPAD QAANPDQAAL LADVNRGLAP MGLAAGVPLG
FEDAYALAMR EADAEREHIR TLADLATHPT LRLGLSHEFL GRADGWPAIV QRYKLPQPPT
GLDHGVAYDA LRASQVDVID IYSTDAKIRR EHLRVLDDPA HVFPRYDAVL LYRADVAQRH
PAQWQAINTL AGHIQRDDMV AMNAAVELEG QSFSQAARRF LAGHGNAPAA TPTRAFFARL
TDGLGRLTQR HLVLVGISTG VAVLLGVPLG LVAARRPIKQ PILAIVGVLQ TIPSLALLAM
LIPVVGSIGV VPALIALAVY ALLPIVRNTI VGLEQVPDGL RDAALALGLT PSQRTRVVDL
PLALPVILAG VKTAAVISVG TATIAAFIGA GGYGERIATG LALNDSATLL AGAIPAAVLA
LLVQAAFELA EWRLRRRSGS TPPR
|
|---|
| |