| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2397 |
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| Symbol | |
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| ID | 6288018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 2491028 |
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| End bp | 2492752 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642625974 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001899963 |
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| Protein GI | 187929476 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.894313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAAGC GGTTGTGGGG CTACCTTCGC CCCGAATTGA CCGCCTTCAT CCTGGCAATG
GTCGCCATGG GTGTGGTGGC GGCCACGGAG GGGATCATCC CCAAGGTCGT GAAGGATCTG
CTGGATCAGG GTTTCGGCGG TGAGTACGCC GGCAAGCTGT GGCAGGTGCC GGCCATGCTG
GTGGGTATTG CGGTGGTGCG CGGCATCGCG CAATTTGCGT CGACGTATCT GTTGAGCCTC
GTATCGAACA AGGTGCTGCT GAATCTGCGG ATGAAGATGT TCGAGCGCCT GCTGCAGGCG
CCGGCCTCGT ACTATCAGCG CAATACGGCC GCGTCGATCA TCAACGCGGT CATCTTTGAA
GTGAACCAGG TGCTGCAGGT GCTGACCGGC GTGTTCATCA CGCTGGTGCG CGACTCGATG
ACGGTGCTGG CGCTGCTGAT CTTCCTCTTC TATACCAACT GGCGTCTGAC GCTGGTGGTG
GCGGTGATCC TGCCGATCAT CGGGCTGCTG ATGTCGCGTA TCAACCGCCG CCTGCGCTCG
CTCAACCGCG AAAGCCAGAA CTTGACCAAC CAGGCCGCCT ATGTGGTCGA AGAGGCCGTG
GGCGGCTACA AGGTCGTCAA GCTGCATGGC GGCGAGGCGT ATGAATCGCT GCGCTTCAAT
GCCATGACGA ACCGCCTCCG TGGTTACGCC ATGCGCGTGG CCGTGGCCGG CGGCCTGAAC
CAGCCGGTGA CGCAGTTCCT GGCAGCGCTG GCGCTGTCTG TCATCCTGGC CATTGCCATG
ATGCAGGCGC AGGCCAATCA GACCACGGTC GGCGGCTTTA CCGGCTTTGT GATGGCGATG
CTGCTGCTGA TCTCGCCGCT CAAGCACTTG ACCGACGTGA ATCAGCCGCT GCAGCGCGGC
CTGACCGCCG CCGAATTCAT CTTTGGCCTG ATCGACACGC CGATCGAACC GCAAGAAGGC
GGCAAGAAGA TCGATCGTGC CCGGGGCGAT GTCCGCTTCG ACAACGTCAC GTTCCGCTAT
GGGGAAGATG GCCGGGCGGC GCTCGATAAT GTCAACCTGC ACGTCAAGCC GGGCGAGGTC
GTTGCGCTGG TCGGGCCATC TGGCAGCGGC AAGACCACGC TGGTGAACCT GCTGCCGCGC
TTCTTCGATC CGACCTCGGG CACGATCTCG CTCGACGGCG ATGCGCTGGC GGATTTGGCG
CTGCACGACC TGCGCCGGCA GATCGCCTTC GTGAGCCAGG ATGTGGTGCT GTTCAATGAC
ACCATCGCCG CCAACGTGGC CTATGGCGCG CGCGACGCCT CCGAGATCGA CATGGCCCGC
GTGCGCCGTG CACTCGAAGC GGCTTACCTG ACCGATGTGG TGGACAACCT GCCCGAGGGC
ATCGATACCA ATGTTGGCGA CAACGGCTCG AAGCTGTCCG GTGGGCAGCG CCAGCGCCTG
GCGATTGCAC GTGCGATCTA CAAGGACGCG CCGATCCTGA TCCTGGACGA AGCGACGTCC
GCGCTGGATT CGGAGTCCGA ACGCCAGGTG CAGGCCGCGC TCGAACGGCT GATGGAGGGC
CGGACGACGC TGGTGATCGC GCACCGCCTG TCGACCATCG AAAATGCCGA TCGGATCATC
GTGCTCGAGC ACGGCAAGAT TGCCGAAGCC GGCACGCACC GCGAACTCAT CGAGCGCGAT
GGGTTGTATG CTGGACTCCA TCGCATCCAG TTCGCTACCC AGTAA
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| Protein sequence | MLKRLWGYLR PELTAFILAM VAMGVVAATE GIIPKVVKDL LDQGFGGEYA GKLWQVPAML
VGIAVVRGIA QFASTYLLSL VSNKVLLNLR MKMFERLLQA PASYYQRNTA ASIINAVIFE
VNQVLQVLTG VFITLVRDSM TVLALLIFLF YTNWRLTLVV AVILPIIGLL MSRINRRLRS
LNRESQNLTN QAAYVVEEAV GGYKVVKLHG GEAYESLRFN AMTNRLRGYA MRVAVAGGLN
QPVTQFLAAL ALSVILAIAM MQAQANQTTV GGFTGFVMAM LLLISPLKHL TDVNQPLQRG
LTAAEFIFGL IDTPIEPQEG GKKIDRARGD VRFDNVTFRY GEDGRAALDN VNLHVKPGEV
VALVGPSGSG KTTLVNLLPR FFDPTSGTIS LDGDALADLA LHDLRRQIAF VSQDVVLFND
TIAANVAYGA RDASEIDMAR VRRALEAAYL TDVVDNLPEG IDTNVGDNGS KLSGGQRQRL
AIARAIYKDA PILILDEATS ALDSESERQV QAALERLMEG RTTLVIAHRL STIENADRII
VLEHGKIAEA GTHRELIERD GLYAGLHRIQ FATQ
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