| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2196 |
|---|
| Symbol | |
|---|
| ID | 6288880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2305790 |
|---|
| End bp | 2306920 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642625767 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_001899762 |
|---|
| Protein GI | 187929275 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.341698 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCT CGTTCACCGA CGAACAGAAG CAACTTGCCG ATGCGGTGCG CCGCTTCATT
GAGAAGGATT ACGGCTTTGA AGCGCGCAAC AAGGTGGTGT ATTCGCCGGA AGGTGTGTCG
CAGAGCCATT GGGATGCACT GGCAGAACTG GGCCTGACCG CGCTGCCAGT GCCCGAAGCA
CAAGGCGGTT TTGACGGCCG TGCGATGGAC TTGCTGGTGG TGATGCAGGA ACTGGGCCGC
GGCCTGGTCG TGGAGCCGTA TCAGGCCACC GTGCTGGGTG CCCAGGCGCT GAAGCTCGCG
GGCGGCCAGG AAGGGTTGCT GGAAGAAGTC GCTGGCGGCG CCGTGAAGCT GGCCATTGCC
TTTGGCGAGC GCCAATCGCG TTACGAGCTT TTCAATGTCA CCACGCGTGC TGCGCAGCAG
GGCAGCGGCT GGACGCTCAC CGGCGAGAAG GCGGTTGTGG TGCATGGCGC GCAGGCAGAC
AAGCTGATCG TCTCGGCGCG CACGGGCGGC GAAGCGCGTG ATACGTCGGG CCTGTCGCTG
TTCGTGGTCG ACCGTGATGC CGCCGGCGTG ACGGTCAAGG ATTACCGCAC GATCGACAAC
CTGCACGCTG CGGATATCCG CTTCGACAAC GCGCCGGCAA CGCTGCTGGG CAAGGCCGGC
GAAGCGTGGG AGACCATCGA CGCCGTAGCC GATCTTGGCT GCGTGCTGTT GTGCGCAGAA
GCGATCGGCC TGATCGATGC GCTGAACGCC GCAACGCTGG AGTACACCAA GACCCGCCAG
CAGTTTGGCG TGCCCATCGC GCGCTTCCAG GCGCTGCAGC ATCGCATGGT CGACATGTTC
ATCCATGGCG AGCAGGCGCG TTCGATCACG TATCTTGCCG CTGCGCATTT TGAAGATGGC
GATGTCGAGG CGCGCCGCCG CTATGTGTCT GCTGCCAAGG CACGTGTCGG CCAGGCGGCG
CGTGACGTTG GCCAGGAAGC GGTGCAACTG CACGGCGGCA TGGGCGTGAC GAACGAACTG
CCCGCCGCGC ACATGTTCAA GCGGCTGACG ATGATCAACA CGACGCTGGG CGACGTGGAT
CATCACCTCG CACGCTTCAC ATCGCTGCCC GGCTTCCAGC AGGCGGCGTA A
|
|---|
| Protein sequence | MDFSFTDEQK QLADAVRRFI EKDYGFEARN KVVYSPEGVS QSHWDALAEL GLTALPVPEA
QGGFDGRAMD LLVVMQELGR GLVVEPYQAT VLGAQALKLA GGQEGLLEEV AGGAVKLAIA
FGERQSRYEL FNVTTRAAQQ GSGWTLTGEK AVVVHGAQAD KLIVSARTGG EARDTSGLSL
FVVDRDAAGV TVKDYRTIDN LHAADIRFDN APATLLGKAG EAWETIDAVA DLGCVLLCAE
AIGLIDALNA ATLEYTKTRQ QFGVPIARFQ ALQHRMVDMF IHGEQARSIT YLAAAHFEDG
DVEARRRYVS AAKARVGQAA RDVGQEAVQL HGGMGVTNEL PAAHMFKRLT MINTTLGDVD
HHLARFTSLP GFQQAA
|
|---|
| |