Gene Rpic_1161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1161 
Symbol 
ID6286321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1248347 
End bp1249513 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content62% 
IMG OID642624731 
Productpolysaccharide export protein 
Protein accessionYP_001898738 
Protein GI187928251 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0571636 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAGCC TGCCCGCCTT GCTTTCGGCA GTGTCGATTG TCGGCATTGC CAGCCTTACC 
GCCTGTTCGT CCGTCCCCTC TTCCGGCCCA ACCCGATCGC AGGTAACCGA CGCCGCCACC
GATGCGTCCG TCACAGCCGG AATCCAGATC GTAGACGTGA CCGAAGAAGT GGCCCAGCGT
CTTCTGGCCG AGCGCCAGAC CGCCGACTTT GCCCGGACGT TGGGGGGCGG GGCGCAATTC
CAGCAGCAAC TGGGCGTGGG CGACGTCATT GAAGTTTCCG TCTGGGAAGC CCCGCCGGCC
ACCCTGTTTG GCGCCACCGG CATGGACCCG CGTGTTGCGC CAAGCAACGC CCGCGTCTCC
GTGCTACCCG AACAGATGAT CAGCGGCGAC GGTTATATCA ATGTCCCATT TGCCGGGCAA
ATCAAGGCCG CCGGGCGCAC CACCACACAA CTGGAAAAGG ACATTACCGC CGCCCTGAAA
GGCAAGGCCA ACCAGCCCCA GGTGCTGGTG CGGCTGTCCA AGAACGTTAC CTCCTACGTG
ACCGTAGTGG GCGACGTTGC CACCAGCACC CGCATGCAAC TGACTGCACG CGGTGAACGG
CTGCTTGATG CCGTGGCCAG TGCCGGCGGC GTGCGCCAGC CGGTAGACAA GATAACGATT
CAAGTCACCC GCGGCAACGC GGCTCAAACC CTGCCGCTGC AAACCATCAT TCGCGACCCG
CGCCAGAATG TGCCGCTGCG TGCTGGTGAC GTCGTAACCG CGCTATTCCA GCCCCTCAGC
TTTACTGCGC TGGGTGCCAC CGGCAAAAAC CAGGAAATCA ATTTCGAAGC GCAAGGCATT
ACGCTGGCCC AGGCCATTGC CCGTGCCGGC GGCCTGGAAG ACTCTCGCGC CGATGCGCGG
GGCGTGTTCA TTTTCCGCTT TGAAGATGCC AACGCCCTGC CCTGGCCGCG CCAGCCGGTG
CGCACCACAC AGAACGGCAA GGTGCCGGTG GTCTACCGTT TGAACCTAAA GGACCCCGGC
AGCTTTTTTG TAGCGCAGAC GTTTGTGATG GATAACAAGG ATTTGCTGTA CGTGTCGAAT
GCACCGATTG CTGAGCTGCA GAAGTTCTTG AATGTAGTGT TTTCCGTGGC TTATCCGGTG
GTGACTACGG TGAATACGTT CAAGTAA
 
Protein sequence
MRSLPALLSA VSIVGIASLT ACSSVPSSGP TRSQVTDAAT DASVTAGIQI VDVTEEVAQR 
LLAERQTADF ARTLGGGAQF QQQLGVGDVI EVSVWEAPPA TLFGATGMDP RVAPSNARVS
VLPEQMISGD GYINVPFAGQ IKAAGRTTTQ LEKDITAALK GKANQPQVLV RLSKNVTSYV
TVVGDVATST RMQLTARGER LLDAVASAGG VRQPVDKITI QVTRGNAAQT LPLQTIIRDP
RQNVPLRAGD VVTALFQPLS FTALGATGKN QEINFEAQGI TLAQAIARAG GLEDSRADAR
GVFIFRFEDA NALPWPRQPV RTTQNGKVPV VYRLNLKDPG SFFVAQTFVM DNKDLLYVSN
APIAELQKFL NVVFSVAYPV VTTVNTFK