| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0666 |
|---|
| Symbol | |
|---|
| ID | 6288742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 706622 |
|---|
| End bp | 707026 |
|---|
| Gene Length | 405 bp |
|---|
| Protein Length | 134 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642624228 |
|---|
| Product | putative type-4 frimbrial pilin-related signal peptide protein |
|---|
| Protein accession | YP_001898249 |
|---|
| Protein GI | 187927762 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4968] Tfp pilus assembly protein PilE |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.379777 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.345081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATC GCCATGCCGC ATTCACGCTT GTCGAGCTTA CGATCGCATT GGCCATCGCT
GCGTTATTGA CCGGCGCCGC CATACAAACC TGGTCGAGAC ACCATGAGCG CGCGCGGCGG
ACTGCGGCGC ATGCGGCGCT GGTCTCAACC ATGGTGGAAT TGGAACGCCA GTATGCGCAC
ACAGGCAATA GCTCCTCACC GGCCAACATT CCGGAATACA TCTCCGGCTA TCACTTGCTT
GCTGGCCCGT GCGATGGGCG TGCTGCCGCA CATTGCATTG AAGTCGTCGC CCAGCCGGTG
CACGCGGGCA CCGACTGCGG CGCGCTTATC CTGCGCAACA CCGGCGAACG GTTCACGCAG
ATCGGCAATG CGCGCCAACC GGCATCGCCC GCATGCTGGC CATGA
|
|---|
| Protein sequence | MKYRHAAFTL VELTIALAIA ALLTGAAIQT WSRHHERARR TAAHAALVST MVELERQYAH
TGNSSSPANI PEYISGYHLL AGPCDGRAAA HCIEVVAQPV HAGTDCGALI LRNTGERFTQ
IGNARQPASP ACWP
|
|---|
| |