| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0447 |
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| Symbol | |
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| ID | 6287613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 477646 |
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| End bp | 480615 |
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| Gene Length | 2970 bp |
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| Protein Length | 989 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642624011 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_001898034 |
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| Protein GI | 187927547 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.926177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000000581329 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAGCCG AAAATCGGGT AGAGCAAGAT CTTATCTCCA AGCTCTGCGA CCTAAAATAT
ACCTATCGGC CAGACATTCG GGACCGCGCC GCACTGGAAG CGAACTTCCG CGAAAAGTTC
GAGGCCCTCA ACCGGGTACA CCTGACCGAC AGCGAGTTCC AACGCCTTCT GGACAGCGTG
ATCACGTCGG ATGTCTACAA TGCCGCCCAG ACGCTGCGGA ACATCAACAG CTTCGAGCGC
GACGACGGCA CGCCGCTGAA CTTCACGCTC GTCAACATCC GCGACTGGTG CAAGAACGAC
TTCGAGGTGG TCAACCAGTT GCGCATCAAC ACCGACAACA GCCATCACCG TTACGACGTG
ATGCTGCTGA TCAACGGTGT GCCTGTCGTG CAGATCGAAC TGAAGACACT GGCCGTCAGC
CCCCGCCGGG CTATGCAGCA GATCGTCGAT TACAAGAGCG ACCCCGGCAA TGGCTACGGC
AAGACGCTGC TCTGTTTTAT CCAGCTCTTC ATCGTCAGCA ATCGCACCGA CACCTGGTAC
TTTGCCAACA ACAACGCGCG CCACTTCAGC TTCAATGCTG ACGAACGGTT CCTGCCTGTC
TACCAGTTCG CAAGCGAGGA CAACAAGAAA ATCACGCAAC TGGATAGCTT CGCCGAGAAG
TTCCTCGCCA AGTGCACCTT GGGCCAGATG GTCAGCCGCT ACATGGTGCT GGTAGCCAGC
GAGCAGAAGC TGCTCATGAT GCGGCCGTAC CAAATTTATG CCGTCAAGGC CATCGTGGAC
TGCATCCATC AGAATTGCGG CAACGGCTAC ATCTGGCACA CCACTGGCAG TGGTAAGACA
CTCACTTCGT TCAAAGCATC CACCTTGCTC AAGGACAACC CGGACATCGA CAAATGCCTG
TTCGTGGTGG ACCGCAAGGA TCTGGACCGC CAGACCCGCG AGGAATTCAA CCGTTTCCAG
GAGGGGTGCG TCGAAGAGAA CACCAACACC GAAACGCTGG TGCGCCGTCT GCTATCTGAT
GACTACGCAG ACAAGGTCAT CGTCACCACC ATCCAGAAGC TGGGTCTCGC TCTGGATGGC
ACCAACAAGC GCAACTACAA AGAGCGCCTG GAGCCGTTGC GCAACCAGCG CATGGTGTTC
ATCTTCGACG AATGCCACCG TTCGCAATTC GGCGAGAACC ACAAGGCCAT CAAGGAGTTC
TTCCCCAACG CCCAGCTATT TGGCTTCACT GGAACGCCCA TCTTCGAGCA AAACGCCAGC
TATCAACAGA TCGAAGGACA ACAAGCCAGT TACCGCACTA CAGACGATCT GTTCCAGCGT
TGCCTGCACC AGTACACGAT CACCCACGCT ATCGAAGACC GCAACGTTTT GCGCTTCCAC
GTGGACTACT TCAAGCCTGA GGGTAAGAAC CCGCCCAAGC CTGGCGAAGG CTTGGCCAAG
GCCAAGGTCA TCGAGACCAT TCTCACCAAG CACGATGCCG CCACCAACGA GCGCAAATTC
AACGCCGTGC TGGCCACCGC CAGCATCAAC GACGCCATCG AGTATTTCGA GGCATTCAAA
ATCCTCCAGG CCAAAAGGCA GGACGAAGAT GAAACCTTCC AGCAGCTGAA CGTAGCTTGC
GTGTTCTCCC CGCCCGCTGA GGGCAACAAG GACGTGCAGC AAATTCAGGA AGACCTGCCG
CAGGAAAAGG AAGACAACCA GCAGGACCCG GAGGGCAAGA AGGCTTCGCT CACTCGCATC
ATTGCCGACT ACAACGCCCG CTTCGGCACC AACCACCGCA TCGGTGAGTT CGACCTGTAC
TACCAGGACG TGCAAAAGCG CATCAAGGAC CAGCAATACC CCAACGCAGA TCTGCCCCAC
GCCGAGAAGA TCGACATCAC CATCGTCGTG GACATGCTGC TCACAGGTTT CGATTCCAAG
TACCTGAACA CCCTGTACGT GGATAAAAAC GTCAAGCACC ACGGCTTGAT TCAGGCCTTT
TCGCGCACCA ATCGCGTGTT GAACGACAGC AAGCCCTACG GCAACATTCT CGACTTCCGC
CAACAGCAGA AGCCTGTGGA AGATGCCATC ACACTCTTCT CTGGCGAGAA GATCGACAAC
CCGCGCGAAA TCTGGCTGGT GGACCCAGCC CCCAAGGTTA TCGACAGCCT GCAAACCGCC
ACCCAGAAGC TGGCCGATTT CATGCAATCA CAGGGTCTGG CCAACGCCCC CGAAGACGTG
GCCAACCTCA AGGGAGACGC TGCGCGCAGC CAGTTCGTCA ACCTGTTCAA GGAAGTGCAA
CGCCTCAAGA CCCAGCTCGA TCAATACACC GACCTGAGCG AGGAACAGAA AACGCAGATC
ACGCAGATCG CGTCGCCCGA CCAGTTGCAA GGCTTCAAAG GCGTGTACCT GGAGACCGCC
AAGCGGCTCA AGGAGCAGCA AGACAAGCAA GGTGACCAGG CTCTCCCCGA GGTGCAGCAG
CTCGATTTCG AGTTCGTGCT CTTTGCCTCC GCTGTCATCG ACTACGACTA CATCATGGCG
CTGATCGCCC GTATGACGCA GCAGAAGCCC GGCAAGCTGA CGCTGAACCG CGAACAGCTT
ATCGGCCTGA TTCAGTCCGA CGCCAAGTTC ATCGACGAGC GCGAGGACAT TGCCGAATAC
ATCCGTGGCT TGCCGGTGGG GCAAGCGCTG GACGAAACTG CCATCCGCGC CGGTTTCGAA
CGCTTTAAGG CCGAGAAGAA GACCCGGGAA CTGACTGATA TCGCCACCAA GCATGGGCTG
GCCGCCGAGG CACTACAAGC CTTCGTGGAT GACGTGCTGC GTCGCCGCAT CTTCGATGGC
GAAGCGTTGA GTGAGTTGAT GGCTCCGCTG GGCTTGGGCT GGAAGGCGCG TACGCAGAAG
GAGTTGGCGC TGGTGGAAGA CCTGACGCCG CTACTGCACA AGCTCGCTCA GGGGCGCGAG
ATTTCGGGGC TGAGTGCGTA TGAACAATAA
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| Protein sequence | MTAENRVEQD LISKLCDLKY TYRPDIRDRA ALEANFREKF EALNRVHLTD SEFQRLLDSV
ITSDVYNAAQ TLRNINSFER DDGTPLNFTL VNIRDWCKND FEVVNQLRIN TDNSHHRYDV
MLLINGVPVV QIELKTLAVS PRRAMQQIVD YKSDPGNGYG KTLLCFIQLF IVSNRTDTWY
FANNNARHFS FNADERFLPV YQFASEDNKK ITQLDSFAEK FLAKCTLGQM VSRYMVLVAS
EQKLLMMRPY QIYAVKAIVD CIHQNCGNGY IWHTTGSGKT LTSFKASTLL KDNPDIDKCL
FVVDRKDLDR QTREEFNRFQ EGCVEENTNT ETLVRRLLSD DYADKVIVTT IQKLGLALDG
TNKRNYKERL EPLRNQRMVF IFDECHRSQF GENHKAIKEF FPNAQLFGFT GTPIFEQNAS
YQQIEGQQAS YRTTDDLFQR CLHQYTITHA IEDRNVLRFH VDYFKPEGKN PPKPGEGLAK
AKVIETILTK HDAATNERKF NAVLATASIN DAIEYFEAFK ILQAKRQDED ETFQQLNVAC
VFSPPAEGNK DVQQIQEDLP QEKEDNQQDP EGKKASLTRI IADYNARFGT NHRIGEFDLY
YQDVQKRIKD QQYPNADLPH AEKIDITIVV DMLLTGFDSK YLNTLYVDKN VKHHGLIQAF
SRTNRVLNDS KPYGNILDFR QQQKPVEDAI TLFSGEKIDN PREIWLVDPA PKVIDSLQTA
TQKLADFMQS QGLANAPEDV ANLKGDAARS QFVNLFKEVQ RLKTQLDQYT DLSEEQKTQI
TQIASPDQLQ GFKGVYLETA KRLKEQQDKQ GDQALPEVQQ LDFEFVLFAS AVIDYDYIMA
LIARMTQQKP GKLTLNREQL IGLIQSDAKF IDEREDIAEY IRGLPVGQAL DETAIRAGFE
RFKAEKKTRE LTDIATKHGL AAEALQAFVD DVLRRRIFDG EALSELMAPL GLGWKARTQK
ELALVEDLTP LLHKLAQGRE ISGLSAYEQ
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