| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0231 |
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| Symbol | |
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| ID | 6289668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 244494 |
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| End bp | 247412 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642623801 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001897825 |
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| Protein GI | 187927338 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCCTC GCCGGCCGCT TGTCGCCATT GCCGGCGGCA TCGGCTTCCT CCTCGTCCTT
GTTGGACTGA CCGTGATGGT CGGCTGGCTG CGGCATTGGC CGTGGGCAGT GAAGCTCGGC
AGCGATCGGC TGCTGATCGT GTTCGCCACC GGCGTCAACC TGACCCTGCT TGGCGCGGGG
CTGGCTGCGC TGCTCGTCGG GACGGTACGG CCGAATGTGC GCTGGGCAGA TCCGGTGCCC
CGGGGGCTGG GCGGCGTGGT GGCGGTGCTG TCCACGCTGC GGCTGGCCGA GATGATCACG
GGATGGCCGA TCGGGCTCGA CTTTCCGGGC ATGCACACAT GGCTGGACCG CCAATGGGTG
ACCGGATGGA TTGGCGGCAT GCACCCCAGC CACGCGCTGG CGATGGCCGC ATCGGCGACG
GCCCTGAGCC TTGTGCCGAC GTTGCGCAAA CCGCACCGCG CGCGGTGGTT CTGGGGCTTG
GTCGGCCTGG CGATGCTGCT CTGCGCGGGC GACCTGCTTG GCCGCGCCAT GGCGCTCGAA
TATCTGTACC CGGCGTGGTT GGTGTGGCGC GCCTCGGACG TAGCGGCCAT CTGCACGCTG
CTGGTGGTCA TGGGCGTGCT GTGCGTTGCG GTGGTCCGGC AGCCGGGCGT GTTGCGCCTG
CGCTTGTCGC CGGAAGACAC CATCGTGTGG ATCAGCGGCG GCTGCGTGGT ACTTGCAGGC
CTGGGAGCGA CCATCACGGC GTTCATCATC CAGGTGGACA GCGTCAGCCT GACATTCGGC
ACCGCGCGGG CGCGGGCCCT ATCCAGCTAC GCTGAAGAGC TTGACCAACT GCTGGCCATG
CGCGCGGAAA ACCCGCGCCT GGTGGCCGCC GCCACGTACA TCCAGGAAGT GCTGCGCCAT
CCCACCGACA ATGCGGCGCG CCTGCGCAGC GAGAGCGCGC TGCAGGCGTA TCGCCAGCAA
GGGTACTCGT ACCTGCAACT GCGTACGCTG GCGGACGAGG GCATCGTCAG TCTCGGCACG
CAAACGCTTG AGCCCGAGCT GTCGATTCGG CTGCACGCCG GCCTCGCGCC CGAGCGCGTC
ACGCTGCAAT GGGTACACGG ATTTGCCATG CGCACAGAAA CGCCTGTCAT GGCAGACGGC
ATGCAGATCG GCTGGCTGGT CGCAGAGCAA CCGCTCGCCC ACATGACCGG CCGCTACGCC
AGTGAACGCG GCATCGGAAA GACCGAAACG CTGGCGATGT CGGGCTTTGA TGCGCGCGGG
CGTGCAATGT CGTTTCCGCA GCGCTTCGAT GCGTACGTGT TCGAATTGCC GGCTCTTACG
GTCGACCGCC GGCCGCTGCC GTCGCGCTTG GCGCTAGCGG GCGAGGCAGG CTACGGCCAG
TGGCAGGACA TCCACGGCAT GCCGACATCG TTCAGCTACA CGCCCATCGG CCACACGGGC
CTGGCGCTGA TCAGCAAGAT CGCGAGCGCC GAGCTGTACG CCCCGATGCG CGTGCAGTTC
GAGCGGCTCG GCGCCTTCAT GCTGTGCCTG ATGATCGCCA GCGTGCTGGT CATCCGCCTG
ACGGTGCGGC CGTTTGCCAA CCGGCTGGCC GCGTCCGAAC GCGCGCTGCG TACCGCAAAC
GAAAGCCTGG AACGCCGCCG TGATGCCTTG CGCGCGAGCC GCGAACAACT GCGCCTGGTG
GCCGACAACG TCCCCGCGCA GCTCAGCTAC GTCGACTCCG ACGGCATCGT CCGCTTTGCG
AGCCGCACCC TGCTCGAAGC CTTCGGCCGC AGTGAAGGCG AGATGCTCGA CCGCCACGTG
CGCGACATCT ACGCCCCTGA GGACTACCGC ACGCTGCTGC CCTACATGAC CGAAGTGCTG
GCCGGCTACC CCGTGCAGTT CGAGATCACG TCCATGCGCA CGGGCGTGCC CCGCTACCTG
AGCGGCCACT ACTTTCCTGA CTACGATGAT CGCGGCACGC TGCGCGGCTA TTTCTCGGTG
CTGCAGGATC TGACGGCGCG CACCGCCGCC GAGCTGGCCC TGGCGCGCAG CGAACGCGCG
CTCAAGCTCG TGCTCGACAA CGCGCCGCTG CTGGTGTCGC ACATCAACCC CGACGGCGTC
TTCACTTTCT GCAACGTCAC GCATGCGCGC TGGTTGCAGC GCACGCCCGA GGAGGTATGC
GGCCAGATGC CGGAACGGGT GTTCACGCCA GGCACGTACG CCTTGCTGGC ACCGTATATG
GTGCGCGCCC AACGCGGAGA ATCGGTCGAA TTCGAGATCA CCGCGCCCTG GTACGAAAAG
CCGCACGCCG CCGGCCCGCG CAACCGCACT CGACATTTCC GCGGCCAGCT CGTCCCCGAC
TCCGCAGAAG CACATGACGG CCGCTGTGGC TTTTACGCCT TCGTGCAGGA CGTGACCGCA
GCCAAGCGCA GCGAGATGGA ACTGTCACGG ATGGCGCACT TTGATGCCCT CACCGGCCTG
CCGAACCGCT ACGAACTCTA CGAGCGCCTG CGCGCCGCAC TGGAGCGTCG TCAGCGCCTG
CCGGCACCGC TTGGCGTGCT GTACCTGGAC GTCGACCACT TCAAGCACAT CAACGATACT
TACGGCCACG CCGCCGGCGA TACGGTGCTG GTGGAGGTCG CACACCGGCT GCAACGTGCC
GTGCGCCGCA CCGACACCGT CGCCCGCCTC GCAGGTGACG AATTCATCAT CCTGCTCGAC
CCCATCGACG CCCCGGATGA TGCGCTGCAC ACCGCGCAGA AGATCGTCAG CGCGATCCGC
CCGCCGATCC ACCTGTCGGA TGGCACCGTC CTGCACGTCA CCACGAGCGT TGGCGTGGCC
TGCCCGGGCC CGGAGGTACA TGATCCAGAC GCCGCCCTAC GTGAAGCCGA TCGCGCACTT
TACTGGGCAA AGTCACGCGG CCGTAACACG GCGGCATAG
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| Protein sequence | MVPRRPLVAI AGGIGFLLVL VGLTVMVGWL RHWPWAVKLG SDRLLIVFAT GVNLTLLGAG
LAALLVGTVR PNVRWADPVP RGLGGVVAVL STLRLAEMIT GWPIGLDFPG MHTWLDRQWV
TGWIGGMHPS HALAMAASAT ALSLVPTLRK PHRARWFWGL VGLAMLLCAG DLLGRAMALE
YLYPAWLVWR ASDVAAICTL LVVMGVLCVA VVRQPGVLRL RLSPEDTIVW ISGGCVVLAG
LGATITAFII QVDSVSLTFG TARARALSSY AEELDQLLAM RAENPRLVAA ATYIQEVLRH
PTDNAARLRS ESALQAYRQQ GYSYLQLRTL ADEGIVSLGT QTLEPELSIR LHAGLAPERV
TLQWVHGFAM RTETPVMADG MQIGWLVAEQ PLAHMTGRYA SERGIGKTET LAMSGFDARG
RAMSFPQRFD AYVFELPALT VDRRPLPSRL ALAGEAGYGQ WQDIHGMPTS FSYTPIGHTG
LALISKIASA ELYAPMRVQF ERLGAFMLCL MIASVLVIRL TVRPFANRLA ASERALRTAN
ESLERRRDAL RASREQLRLV ADNVPAQLSY VDSDGIVRFA SRTLLEAFGR SEGEMLDRHV
RDIYAPEDYR TLLPYMTEVL AGYPVQFEIT SMRTGVPRYL SGHYFPDYDD RGTLRGYFSV
LQDLTARTAA ELALARSERA LKLVLDNAPL LVSHINPDGV FTFCNVTHAR WLQRTPEEVC
GQMPERVFTP GTYALLAPYM VRAQRGESVE FEITAPWYEK PHAAGPRNRT RHFRGQLVPD
SAEAHDGRCG FYAFVQDVTA AKRSEMELSR MAHFDALTGL PNRYELYERL RAALERRQRL
PAPLGVLYLD VDHFKHINDT YGHAAGDTVL VEVAHRLQRA VRRTDTVARL AGDEFIILLD
PIDAPDDALH TAQKIVSAIR PPIHLSDGTV LHVTTSVGVA CPGPEVHDPD AALREADRAL
YWAKSRGRNT AA
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