| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4744 |
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| Symbol | |
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| ID | 8017319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012855 |
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| Strand | + |
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| Start bp | 88937 |
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| End bp | 89986 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644828433 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002979633 |
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| Protein GI | 241589608 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.332576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATC CAATAGGGGA CGCGAAGAGC AGGAGGGAAC TAAGCGTCTT GGCGAAGGTT
CGGAACTGCT TGACGACTCT GCAGGAGTGG TTTGATGACC AATCGGTGAC GGACATCATG
ATCAACCGGC CGGATGACGT ATGGGTCCAG CAGGGTGGCA GACAGTTCAG CACCGGCGCC
AAGATTAGCG CTAGCCAGAT TGAGGCCGCA ATTACGCTGC TGGCTTCCAA CTCTGGAATC
ACCGTCAGCA ATGAATCTGC TGACGCAATC GTCAGCACCA AGCTGCCAGG ATTCCGCGTA
GAGGCAACGC TGCCACCGGT GGCGGTCGAT GGCCCGACCA TTTGTTTCCG GCGAAACAAC
ATGGTGGTCA TGGCGATGGA AGATTGGATC AAACAAGGTG CTCTTCCTCC GGAGATTGCC
GAGTTTCTCG TGGACGTTGT CCGAAAGCGT CTCGGAGTCG CGGTTGTCGG AAGTACCGGA
TCTGGAAAGA CAACGTTCGC CAATACGTTG CTCGGGTGCT TCCCGGAAGG TGACCGAATT
ATCACGATCG AGCAGGTGCC GGAATTGGTG CTCAAGGCTC CAAACAGTGT GCGCTTGCAG
ATCAATCCGC AGCTCAAGGT TACGGCGAAG CGGCTGCTTG AAAGTGTGCT GCGACAGAAC
CCCAACCGCA TCGTGCTCGG GGAAGCTCGT GGTGCAGAAG CAAACGATCT GCTCCAGTCA
GCGAACACCG GCCACCCGGG CCCGCTTGTC ACCTTGCACG CAAACAACGG CAAGGAAGGG
TTGACGCGAT TCGAGGACAT GGTTGCGCAA TCGAGCGACG CACCTGATAG CCGCGAGGGC
ATTCAAGTAC GAATCGCTTC TGCCTTCCAG GTGATGGTCT TCATGACACT GGTTGGCGAC
GACCGGATTG TCGCTGAAGT AGTGAGTGTC GATGGCTTTA ACCGCCAAAC GAAAGAGTAC
GAAACCAAGC TGATCTATAG GAGCAGTCGA TATGAAACTT TTGATGTCCC ACTTGTCGGT
ATTCAACGCG ATCTCGCAGA AGCAGCGTAA
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| Protein sequence | MSDPIGDAKS RRELSVLAKV RNCLTTLQEW FDDQSVTDIM INRPDDVWVQ QGGRQFSTGA
KISASQIEAA ITLLASNSGI TVSNESADAI VSTKLPGFRV EATLPPVAVD GPTICFRRNN
MVVMAMEDWI KQGALPPEIA EFLVDVVRKR LGVAVVGSTG SGKTTFANTL LGCFPEGDRI
ITIEQVPELV LKAPNSVRLQ INPQLKVTAK RLLESVLRQN PNRIVLGEAR GAEANDLLQS
ANTGHPGPLV TLHANNGKEG LTRFEDMVAQ SSDAPDSREG IQVRIASAFQ VMVFMTLVGD
DRIVAEVVSV DGFNRQTKEY ETKLIYRSSR YETFDVPLVG IQRDLAEAA
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