Gene Rpic12D_4038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4038 
Symbol 
ID8021726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp612704 
End bp613396 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content68% 
IMG OID644832820 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_002983960 
Protein GI241665601 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.679887 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTGC TGGTGTCAGC GGCTGCCATC GCGGGCGGGC TAGCCATTGG CCTGCTCTTG 
ACGGCGCTGC GCGCGAGTGC TCAGCCGTGG CTGCACTTGC CGGCCCGCGC GCTGGTGGCC
TTTCTGCGCA AGACGCCGTT GCTGGTGCAA TTGTTCTTCT GGTATTTCGG CGCGGCGCAA
TTGCTTGGCG AAGACGTGGT CGGGGCCATC ATCGGCTGGG GCGGCATCGC CGTGGGTGCC
TGGCGGTTGC CTGCGCCGTC GTTCGAATTT CTGGCGGCCG CGTTCGGCAT CGCGCTGTAT
GCCGGTGCGT TCTTCTCGGA AGAGCTGCGC GCTGGCATTC GGGCCGTGCC GCGCGGGCAG
CGAGAGGCCG CGCTATCGCT GGGTTTCACG CCGCGTGCCG CCTTCCTGCG TGTGGTGCTG
CCGCAGGCGC TGCGCGTGTC GGCGCTGCCG TTGCTGGGGC AATGTGCCAA CACCATCAAG
AACACCTCGC TCGCCATGGG TATCGGGCTG GCAGAGCTTG CGTATAGCGC CCGGCAGGTG
GAAACCGACA CGCTGCTCGC CTTCCAGGCC TTTGCCGTGG CAACCGTGCT GTATGCCGGA
GTGATTCTGT TGCTGCAATG GGTGGCGCCC CGCGTGCTGC GGCGGCTTGG CTGGACATCG
ACATCGACGC TACCGGACGG AGCCCCCGCG TGA
 
Protein sequence
MTLLVSAAAI AGGLAIGLLL TALRASAQPW LHLPARALVA FLRKTPLLVQ LFFWYFGAAQ 
LLGEDVVGAI IGWGGIAVGA WRLPAPSFEF LAAAFGIALY AGAFFSEELR AGIRAVPRGQ
REAALSLGFT PRAAFLRVVL PQALRVSALP LLGQCANTIK NTSLAMGIGL AELAYSARQV
ETDTLLAFQA FAVATVLYAG VILLLQWVAP RVLRRLGWTS TSTLPDGAPA