| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3853 |
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| Symbol | |
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| ID | 8021540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 423932 |
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| End bp | 426640 |
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| Gene Length | 2709 bp |
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| Protein Length | 902 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644832643 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002983784 |
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| Protein GI | 241665425 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.769639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCCTG CGCGCCAGAC GCCGCCCGGA CACGACAACA TTGAAATGGG GATGGGGATG
GCCTTGGAGC AACCGGATAC GTCAGGTCGC ACCATACGGC GACGGCTGCG CGCCTGGCTG
TCGCCGCTGA ACGTTGGTGT CGCGGTATGC CTCGCCGCCA TCTGGTGGTT CACGTTCGAC
CAGCTCGCAC AGGCACGGGA TCGGCTCATC CACAATGCCG AGATCCGCAC CCGACTCGAG
GCGCAAGCGT TCGGCCAATA TTCGCTTGGC AGCACCCGCC GCCTGTCGGA GTTTCTTCTG
GATCTCCGCG CCAGCTGGCT GGCTGGCCGG GATGTGTTCG AGCGGGTCAT TCACGAGCGC
GAAGAGGCGG TGCGCGACCT GACCTCCCAG GTTGCCGTCA TCGACGCGAA CGGCCTGTTG
CTCTACAGCT CCATCGGACC AGTCAGCCAG CCGGTCGACC TGAGCGAGCG CGAGCACTTT
CGCGTGCACA AGGCGTCAGG CGGACGCGAC GTGCTGTTCA TCAGCGATCC GGTGCAGGGC
AAGGTGTCAA AGAAATGGTC GATCCAGTTC ACGCGGCCGA TCCTGAAAGA TGGGCAGTTC
GCAGGGGTGA TGGTGGTGTC CGTCAGCCCC GAGCAGTTCG CCAGCTTTGC CAACACCCTC
ACCGTCGGCA CGAACGGCGT GGCCAGCATC ATCAAGGAAT CCGGGCAAGT GATCGCCCGC
ATGCCCGACC CGACAGCCGG CATCGACAGC CCGCCGCGCA AACGACGCTT CAACGAGCCG
GGCGCCCAGG AGTCGGGCAA CTATCGCACG GTGTCCGGTA CGGATGGCGT CGAGCGCCTG
CTGGGCTATC ACCACGTGCC CGAGATCGGC TTGTACTTCC TCGTGGGGGA GTCCATCGCA
TCGATCCTGG CGCCTTATGA GGCGTACCGC CGCACCGCGC TGGCAGGGGC CATCGGCTCG
ACATTGCTCA TGGCACTGCT GTACGCGACG CTGCGCCGGT CCATGTCCCA GCGCAAGCAG
CACATTGACG AGATGCGCCT GGCCTCGCTC GTGTACGCGT CCAGCAGCGA AGCGATGATG
GTCACGACAC TCGACGGTAC CGTCATCGAC GTCAACCCGG CCTTCACGGT CACAACGGGC
TATACAGCGC AGGAGTTCAA AGGCCAACAC AGTGATGCCA TCCGGTCTGA ATGCAATGAC
AGCGCCGTGG TCGACACCAT GCGCACGGCC GTCACGACCA AGGGCACGTG GAGCGGCGAA
TACCTGATCC GCCGCAAGGA CGGCACCGAA TTTCCGGCGC TGCTCACCGT CGACACGTTT
GCCGGCCACA AGCTGGGCGC GCCCAGCCGT GTTGCGCTCA TCCACGACAT CACCGAAAAG
AAGCGTGCCG AAGAGGTGAT CTGGCGGCAG GCCAACTTCG ATACGCTGAC CGAACTGCCC
AACCGGCACA TGTTCTATGC GAAGCTGCGC CAGGAGATCC TGCATGCCAG GCAGGCGGCA
ACCGCCGTGG CGCTGCTGTT CATCGACCTG GACCGGTTCA AGGAAGTCAA CGACACGCTC
GGCCACGATC AGGGCGATGT GCTGCTCAAG GAGATCGCCC GGCGCATCTC CGCCATCGTG
CGCGGCACCG ACACCGTCGC GCGCCTGGGC GGTGACGAAT TCACCATCAT CCTGCCCAAC
CTGCCAGACG CAGGCGCCGC CGCCCCGATC ATCCGCAGCC TGCTCGCGCG CATCGCCACG
CCGGTACAGC TTGGCGAAGA AAGCGTCGAG GTGACGGCCA GCATCGGCCT GGCGTTGTAT
CCGCGCGATG CCGACAATGC GGAATCGCTG CTCGTGCGCG CCGACCAGGC GATGTTTGCC
GCCAAGAGCG CGGGGCGCAA CCAGTGGTCC GTCTTCACGC CCGCACTACA GCGGGCCGAA
CAGGAACGCC TGCGCATCAC CAGCGACCTG CGCATCGCCA TCGAGCAGAA GCAGCTGGCG
GTGCATTACC AGCCCATCGT GGATCTGCGC AGCGGTGCGA TCAACAAGGC CGAGGCGCTG
ATTCGCTGGA CGCACCCCGT GCGCGGAGAA ATCGAACCGG CCGATTTCAT TCCGGTGGCC
GAGGAAACCG GCCTGATCGT CCAGATCGGC AAATGGGTCT TGAACGAAGC ACTGACCGAG
GTCACGCGCT GGCACACGGT GCTGGGCAGG CACATGCAGG TTTCAGTGAA CAAATCGCCC
GTGGAGTTTC GCGCCGCCGG ACAACTGGGC GACTCCTGGG CCGATGTGGT GAAGCGCCGG
GCGATTCGGC CAGGCAGCCT GGTCATTGAG ATCACGGAAG GCGCGCTGAT GGAAGGCAGT
GCCGAGGTGG TCGATCACCT GACCCGCCTG CGCCAGGCCG GCATCGAGAT TGCGCTGGAC
GATTTCGGCA CGGGGTATTC GTCGCTGTCG TACCTCAAGC GCTTCGACAT CGACTACATC
AAGATCGACC AGTCGTTCGT GCGCAGCCTC GCGCATGACC CGAAGGACAT CGCGCTGTGC
AGCGCCATCG TGAGCATGGC GCACGCCCTG CGCATCAAGG TCATTGCAGA GGGCATCGAG
ACCGAGGAGC AGAAGGCGAT CCTGGTGGCG GCAGGCTGTG ACTACGGGCA GGGGCACCTC
TTCTGCCCGC CGGTGCCGCC CGCAGCCTTT GAAGCCTTTG TGGCCAAAAG CCAGCTTGCC
GAAACCTGA
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| Protein sequence | MPPARQTPPG HDNIEMGMGM ALEQPDTSGR TIRRRLRAWL SPLNVGVAVC LAAIWWFTFD
QLAQARDRLI HNAEIRTRLE AQAFGQYSLG STRRLSEFLL DLRASWLAGR DVFERVIHER
EEAVRDLTSQ VAVIDANGLL LYSSIGPVSQ PVDLSEREHF RVHKASGGRD VLFISDPVQG
KVSKKWSIQF TRPILKDGQF AGVMVVSVSP EQFASFANTL TVGTNGVASI IKESGQVIAR
MPDPTAGIDS PPRKRRFNEP GAQESGNYRT VSGTDGVERL LGYHHVPEIG LYFLVGESIA
SILAPYEAYR RTALAGAIGS TLLMALLYAT LRRSMSQRKQ HIDEMRLASL VYASSSEAMM
VTTLDGTVID VNPAFTVTTG YTAQEFKGQH SDAIRSECND SAVVDTMRTA VTTKGTWSGE
YLIRRKDGTE FPALLTVDTF AGHKLGAPSR VALIHDITEK KRAEEVIWRQ ANFDTLTELP
NRHMFYAKLR QEILHARQAA TAVALLFIDL DRFKEVNDTL GHDQGDVLLK EIARRISAIV
RGTDTVARLG GDEFTIILPN LPDAGAAAPI IRSLLARIAT PVQLGEESVE VTASIGLALY
PRDADNAESL LVRADQAMFA AKSAGRNQWS VFTPALQRAE QERLRITSDL RIAIEQKQLA
VHYQPIVDLR SGAINKAEAL IRWTHPVRGE IEPADFIPVA EETGLIVQIG KWVLNEALTE
VTRWHTVLGR HMQVSVNKSP VEFRAAGQLG DSWADVVKRR AIRPGSLVIE ITEGALMEGS
AEVVDHLTRL RQAGIEIALD DFGTGYSSLS YLKRFDIDYI KIDQSFVRSL AHDPKDIALC
SAIVSMAHAL RIKVIAEGIE TEEQKAILVA AGCDYGQGHL FCPPVPPAAF EAFVAKSQLA
ET
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