Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3605 |
Symbol | |
ID | 8021292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 159496 |
End bp | 162645 |
Gene Length | 3150 bp |
Protein Length | 1049 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644832396 |
Product | heavy metal efflux pump, CzcA family |
Protein accession | YP_002983537 |
Protein GI | 241665178 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.584733 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.967685 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGACG CATTGATTCG CGGCGCGCTC AAGCAACGGC TCGTGGTGGC GGTGATTGCC GCTGTGCTGC TGTTCTTCGG GTTTGACGCC GCACGCAAGC TGTCGCTTGA CGCCTTTCCG GACGTGACCA ACGTGCAGGT GCAGATTGCT ACGGAGGCGC CGGGGCGCTC ACCCGAAGAG GTCGAGCGCT TTGTGACCGT GCCGGTGGAA ATGGCGATGA CCGGCCTGCC GGCGCTGACC GAGATGCGCT CGCTCAACAA GCCGGGCCTG TCGCTCATCA CGCTCGTCTT TACCGACGAG ACCGATGTGT ACTTCGCGCG CCAGCTTGTG ATGGAGCGGT TGATGGAGGT GCAGTCCCGC ATGCCAGCGG GTGTGACGCC GGTGCTGGGC CCGGTATCGA CGGGCCTGGG CGAGGTGTAT CAGTACACGC TCGACAAGCC GGATGACGGC GACAAGGAAC TCTCGGTGGA GGAACTCACC CAGCGTCGCA TTGCGCAGGA CTGGGTGGTG CGTCCGCTGC TGCGCTCCAT TCCGGGCGTG GCCGAGATCA ACTCGCAGGG TGGTTACGAG AAGCAGTATC AGGTGCTCGT CAACCCGGAA CGCCTGCGCC ACCACAACGT GACGGTCAAG CAGGTGTTCG AGGCGCTGGC CGCCAACAAC GCCAACTCGG GCGGCGGTGT GCTGCCGCAC TTCGCAGAGC AGTACCTGAT TCGCGGCGTG GGCCTGGTGC GCGACACCAA CGACATTGGC GCCATCGTGC TCAAGGAGGT CAACGGTACG CCGCTCACGA TCCGCGACGT GGCTGAGGTG AAGATCGGCA CCGCGGTGCG CGCGGGGGCG GTGGTCAAGA ACGGCGTGAC GGAATCCGTT GGCGGTGTGG TGATGATGAT GCGCGGCGGC AATGCCAAGG AAGTCGTCGC CCGCATCCAG GACCGCGTCA AGGCCATCAA CAACGACGGC ATGCTGCCCG ACGGCTTGAA GATCGTGCCG TACTACGAGC GTTCAGAGCT GGTCGATTCA GCCCTGCAGA CCGTCATCAA GGTGCTGGCT GAAGGCGTGG TACTGGTGGT GATCGTGCTG CTGCTGTTCC TCGGCGACAT CCGTTCATCG CTCATCGTGG TCGGCACGCT GATCCTCACG CCGCTGCTGA CGTTCATGGC GATGAACAAG CTCGGCATCT CGGCCAATCT GATGTCATTG GGAGGCTTGG CCATTGCCAT CGGCTTGATG GTCGATGGCT CGGTGGTCGT GGTGGAGAAC GCCTTTGCGC ATCTGGCCAA GCCGCGCGAT CCGAACGAGA GCCGCGCGCG TGTGATCCTG CATGCCGTGA CGGAGGTGGC GACGCCCGTG ATCTTTGGCG TGGGCATCAT CATCCTGGTG TTCCTGCCGC TGATGACGCT GGAGGGCATG GAGGGCAAGA TGTTTGCGCC GCTGGCCTTC ACGATTGCGA TTGCACTGTT CTTCTCGCTG GTGCTGTCGC TCACGTTGAC GCCGGTGCTG TCGTCGTATC TGCTCAAGCC CAAGGCGCAT AAGCACGGTG AGGGTGAGCA CAGCGACGAC CCACATGCCG AGCACGACGC GCATGACACG TGGCTGATCC GCAAGATGAA GAAGCCGTAT CTGCGCTTGC TGGAGTTGAG CCTCAACAAC GGCCGCAAGA CCGTCGTCGT GGCCGTGGCC GTGTTTCTGG CCACCGGTGC GCTGATGCCG TTCCTCGGCA CGGCGTTCAT TCCGGAGATG AAGGAAGGCT CGGTGGTGCC AGGCATCAAC CGCGCGCCGA ACATCTCGCT GGAAGAGTCG ATCCGCATGG AGATGGAAGC CATGCGCCTG GTGATGCAGG TGCCGGGCGT GAAGTCGGCC GTCTCTGGCG TGGGCCGAGG TGAGTCTCCA GCCGATCCGC AGGGCCAGAA CGAGTCGACG CCGATCGTCT CCCTCAAGCC GCGCGACGAA TGGCCCAAGG GCTGGAATCA GGACGACATT GCCGAAGCGA TGCGCAAGGC GCTGCAGGTG CTGCCCGGCG TGCAGATCGT CATGGCGCAG CCGATTTCTG ACCGCGTGGA CGAGATGGTG ACCGGCGTAC GTTCCGACGT GGCCATCAAG GTGTTCGGCG ACGACCTGAA CACCTTGCGC GAGAAGGCCG AGGCGATTGC CAAGGTGGCG CAGGGCATCC AGGGTGCGCA GGACATGCGC GTGGAGCGGA TCACCGGTCA GCAGTATCTG CAGATCGCGA TCGACCGCCA GGCCATTGCG CGCCATGGTC TGAACGCGGC CGACGTGCAC AACGTGATCG AAACCGCCAT CGGCGGCAAG GAAGCCACGG AGATCTTCGA AGGCGAGCGC CGCTTCAGCG CGGTGGTGCG CCTGCCGGAC GCATATCGCG GCAGCGTGGA GGCCATCCGC AACCTGATCG TGGCCGCACC CAATGGCGCA CAGGTGCCGA TGGAGAGCAT CGCCCGCATC GATGTGACAG ACGGCCCCGC GCAGATCAGC CGCGAGCTGG GCAAGCGCCG CGTGGTGGTG GGCGTGAACG TGCGCGACCG CGACTTGGGC GGCTTCGTGG CCGAGCTGCA GGCCGCCGTC GCACAGAAGG TCAAGCTGCC CGAGGGCTAC TACCTGGAAT GGGGAGGCCA GTTCCAGAAC ATGGAACGCG CCATGGGCCA CCTGAAGGTG ATCGTGCCGA TTACGGTGGC CGCCATCTTC TTCCTGCTGT TCCTGCTCTT CAACTCGGTG CGCTACGCCA CGCTGATCAT CCTGGTGCTG CCGTTCGCCT CGGTGGGCGG GATCATCGGC CTGTTTGTCA CGGGTGAGTA CCTGTCTGTG CCGGCATCGG TGGGTTTTGT GGCGCTATGG GGCATCGCGG TGCTCAACGG CGTGGTGCTG GTCAGCACGA TCCGCAGTCT GCGCGAGCAG GGCATGTCGG TGGAGGAATC GGTGCGGCTG GGCTCGCGCA TGCGTTTCCG GCCCGTGATG ATGACGGCCA CGGTGGCCAT GCTGGGCTTG ATCCCGTTCC TGTTTGCCAC GGGGCCGGGT TCAGAGGTGC AACGGCCGCT GGCCATCGTG GTGATCGGCG GTCTGTTGAC CTGCACGCTG CTCACGCTGG TGATGCTGCC CACGCTGTAC AAATGGTTTG ATGAGGAGTC GAAGGCATGA
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Protein sequence | MIDALIRGAL KQRLVVAVIA AVLLFFGFDA ARKLSLDAFP DVTNVQVQIA TEAPGRSPEE VERFVTVPVE MAMTGLPALT EMRSLNKPGL SLITLVFTDE TDVYFARQLV MERLMEVQSR MPAGVTPVLG PVSTGLGEVY QYTLDKPDDG DKELSVEELT QRRIAQDWVV RPLLRSIPGV AEINSQGGYE KQYQVLVNPE RLRHHNVTVK QVFEALAANN ANSGGGVLPH FAEQYLIRGV GLVRDTNDIG AIVLKEVNGT PLTIRDVAEV KIGTAVRAGA VVKNGVTESV GGVVMMMRGG NAKEVVARIQ DRVKAINNDG MLPDGLKIVP YYERSELVDS ALQTVIKVLA EGVVLVVIVL LLFLGDIRSS LIVVGTLILT PLLTFMAMNK LGISANLMSL GGLAIAIGLM VDGSVVVVEN AFAHLAKPRD PNESRARVIL HAVTEVATPV IFGVGIIILV FLPLMTLEGM EGKMFAPLAF TIAIALFFSL VLSLTLTPVL SSYLLKPKAH KHGEGEHSDD PHAEHDAHDT WLIRKMKKPY LRLLELSLNN GRKTVVVAVA VFLATGALMP FLGTAFIPEM KEGSVVPGIN RAPNISLEES IRMEMEAMRL VMQVPGVKSA VSGVGRGESP ADPQGQNEST PIVSLKPRDE WPKGWNQDDI AEAMRKALQV LPGVQIVMAQ PISDRVDEMV TGVRSDVAIK VFGDDLNTLR EKAEAIAKVA QGIQGAQDMR VERITGQQYL QIAIDRQAIA RHGLNAADVH NVIETAIGGK EATEIFEGER RFSAVVRLPD AYRGSVEAIR NLIVAAPNGA QVPMESIARI DVTDGPAQIS RELGKRRVVV GVNVRDRDLG GFVAELQAAV AQKVKLPEGY YLEWGGQFQN MERAMGHLKV IVPITVAAIF FLLFLLFNSV RYATLIILVL PFASVGGIIG LFVTGEYLSV PASVGFVALW GIAVLNGVVL VSTIRSLREQ GMSVEESVRL GSRMRFRPVM MTATVAMLGL IPFLFATGPG SEVQRPLAIV VIGGLLTCTL LTLVMLPTLY KWFDEESKA
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