| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3407 |
|---|
| Symbol | |
|---|
| ID | 8021092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 3596973 |
|---|
| End bp | 3597956 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644832201 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_002983343 |
|---|
| Protein GI | 241664983 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCG TCATCACCGG CGGCGCCGGT TTCCTGGGCC AGCGCGTGCT GGCGGCACTG
CTTCAGCAAC CGGGCCTGCC GGATGCGGAC GGCACGGAGC AGCCGGTGGA GACCTTCATC
GTGCTGGACC AGGTGGCCGG TCAGATTGCC GATGCGCGCG TGCGCTACGT GACCGGCGAT
GCCTCCGACC CCGCCCTGAT AGCCCAGGTG ATCGACGAAA ACGTGGGCGG CGTGTTCCAC
CTGGCCGCCG TGGTGAGCGG CACCGCGGAA GCCGATTTCG ACCTCGGCAT GCGCGTGAAC
CTCGACGGCA CGCGCGCATT GCTCGATGCG CTGCGCGCGC AGCACGCCAA GACCGGCCGT
GCGCCGCGCG TGCTGTTCGC CAGCTCCGTG GCAGTGTTCG GTGGCCAACT GCCGGCCGTT
GTCACCGACG ACACGGCGGC CACGCCGCAG GCCTCGTATG GCGTGCAGAA GCTCATGGGC
GAATTCCTGG TCGGCGAGTA TTCGCGCAAG GGCTACATCG ACGGCCGCGC CGTGCGCATC
CCCACGGTGT CGGTACGCCC GGGCAAACCG AACGGCGCGG CCTCGAGCTT TGCCAGCGGC
ATCATCCGCG AGCCGCTGGC CGGCGAGGAA GCCATCTGCC CGGTGGAAGC CGAGACTGAG
CTTTGGCTCG CCTCCCCGCG CCAGGTCGTG GCCTCGCTGC TGCACGCGTA CACGCTGCCG
GCGTCGGCAT GGGGCAATCG CCGCTCACTG AATCTGCCGG GCATTACGGT GCGCGTGGGC
GAGATGGTGG AAGCGTTGCG CAAGGTGGCG GGCGATGCGC CGGTCTCGCG CATCCGCTGG
GAGCCGGACG CGCGCATCAA GGCCATCGTG CAAAGCTGGC CGGCGCGCTT CGATACCGCG
CGCGCCGATG CGCTGGGCTT TGGCCGCGAC ACCTCGTTCG AAGCGATGGT GCGGGATTAC
GTGGACAGCG CGAAGGGCGC CTAA
|
|---|
| Protein sequence | MNIVITGGAG FLGQRVLAAL LQQPGLPDAD GTEQPVETFI VLDQVAGQIA DARVRYVTGD
ASDPALIAQV IDENVGGVFH LAAVVSGTAE ADFDLGMRVN LDGTRALLDA LRAQHAKTGR
APRVLFASSV AVFGGQLPAV VTDDTAATPQ ASYGVQKLMG EFLVGEYSRK GYIDGRAVRI
PTVSVRPGKP NGAASSFASG IIREPLAGEE AICPVEAETE LWLASPRQVV ASLLHAYTLP
ASAWGNRRSL NLPGITVRVG EMVEALRKVA GDAPVSRIRW EPDARIKAIV QSWPARFDTA
RADALGFGRD TSFEAMVRDY VDSAKGA
|
|---|
| |