| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3229 |
|---|
| Symbol | |
|---|
| ID | 8020913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3408988 |
|---|
| End bp | 3410661 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832024 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002983167 |
|---|
| Protein GI | 241664807 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGC GCCACCGTCC CGCCTCGTCG TCGGCTTCAG CAGCACCGGC CAAGGGCGGC
AACGGTGCGA TCAGCCTGCG CCTGCATCTG TTGCGTGCGC TGGCGACACC GCTGTTCGGC
CTCATTGTGG GGACCGGCGC GCTGTCGTAC TGGCTCGCCG CGCATTACAC CGCGCAGGTG
TTCGATCGCG CATTGGTGGG GGTGGCGAAC ACGCTGGCTG AGCAATTGCG CATCGCCGGT
CCGCATGTGC CGGCGGCCAA GCTCTACGAC ATTGCTCTCA CCGCCCAGAC GCTCGTCCAG
AACAGCGGCG AAGACCGCAT CTACTGGCGC ATTTCCGGCC CCACGGGCAC CCTCGTTGGG
CGCGACACGC CATTGGGCTA CGGCTCCGGC CAAGTCCGCA TTGGCGATGC GCGCGTGTTC
TACAGCTGGA TCGACGGCAA ACAGGTACGT GCGGTGCATC TGCTCGTGCC GGGCGTGAGC
GCGGAGGTGC CCAAGCCGCA CTCGCCGCGA CAACCTGTAC CGCCCGATCC CGAAGACGAT
GTCACGCGCC CTGCGCTCGC GCCCACGCAG GCGCAGACGG CACCTGCGTT CAACCCGTCC
AACCCGCCCG ATGCCATGCA GGCCGAGGGC GGCATCGTCG TGGAAGTGGC GGAGCTGCTG
GACCATCGCG ATACGGCCGC CAAGGAAGTG CTGCTGTCGG TGTCGATTCC ATTGATCGTG
CTGCTGGCAA TTGGCGGGCT GATTCTTTCA CTCGTGCTCA AGGAAGAACT GCAGCCGTTG
CAGACGCTGG CCGATACGCT CAACAAGCAG AGCGCGCGTT CGGTGACACC GCTGCCGGCG
GAATCGGCCG AACGCGTGCC GGCCGAACTG CAGCCGCTCA TCAACGCGAT GAACGCGCTG
CTGGCCCGGC TGCGCGACGC ACTGGAAGCG CAGCGCACCT TCATCGCAGA CGCGGCACAT
CAACTCCGCA CGCCGCTGAC CGCGTTGAAG CTGCACGCCG ATCGCGCTGT CGACGCCAAG
ACATTGGACG ATGCCCGCCC CGCGCTGCTC GAGCTGCAAT CGGGTGCGAA CCGCGCGGTG
CGTCTATCCA ACCAGTTGCT CACGCTGGCG CGTGCCGAGC CAGGTATGAC GCTGGACCAA
CTGGGCACGC CGATGCGCGT CGATCTCGTC TCGCTGGCGT TCGATACCGG CGCCGAATGG
GTGCCGCGCG CGCTTGCACG CGGGCTGGAC CTGGGCTTCG AGCCCTGGCC GCACGACGCC
ACGCTGCCGG GTTCCTTGCA GGCACCGGTG CTGGCCAATG CAGTGCTGCT GCGCGAAGCC
ATCAACAACC TGCTCGACAA CGCCATCAAA TATGTGCCGG CCGGCGGACG CGTAACCTTG
CGCGCCGGCA TGGAGGCCGA CGCGGCATCC AAGTGGTGGG GTGTGGTGAG TGTGGAAGAC
AACGGCCCCG GCATTCCACC CGAGCGGCGC GGTGAAGTGT TCCAGCGCTT CTTCCGCGGG
GATGCGGACC ACCGCCCTGG GCAGCCGCAA GGCAGCGGCC TGGGCCTGGC CATCGTGCAC
GACATCGTGC GTCTGCACGG CGGCACCGTT GCCATCGATG ATGCAACCGC GCGCGATGGC
AGTCGCGTGA TGCGCTTCGT GTTGCGTCTG CCGCTGGCAG ACGACGCCGT CTGA
|
|---|
| Protein sequence | MFKRHRPASS SASAAPAKGG NGAISLRLHL LRALATPLFG LIVGTGALSY WLAAHYTAQV
FDRALVGVAN TLAEQLRIAG PHVPAAKLYD IALTAQTLVQ NSGEDRIYWR ISGPTGTLVG
RDTPLGYGSG QVRIGDARVF YSWIDGKQVR AVHLLVPGVS AEVPKPHSPR QPVPPDPEDD
VTRPALAPTQ AQTAPAFNPS NPPDAMQAEG GIVVEVAELL DHRDTAAKEV LLSVSIPLIV
LLAIGGLILS LVLKEELQPL QTLADTLNKQ SARSVTPLPA ESAERVPAEL QPLINAMNAL
LARLRDALEA QRTFIADAAH QLRTPLTALK LHADRAVDAK TLDDARPALL ELQSGANRAV
RLSNQLLTLA RAEPGMTLDQ LGTPMRVDLV SLAFDTGAEW VPRALARGLD LGFEPWPHDA
TLPGSLQAPV LANAVLLREA INNLLDNAIK YVPAGGRVTL RAGMEADAAS KWWGVVSVED
NGPGIPPERR GEVFQRFFRG DADHRPGQPQ GSGLGLAIVH DIVRLHGGTV AIDDATARDG
SRVMRFVLRL PLADDAV
|
|---|
| |