Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2956 |
Symbol | |
ID | 8020628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 3101938 |
End bp | 3103197 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644831743 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_002982898 |
Protein GI | 241664538 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.127266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000719262 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTACCG AAGCTCCTGC CATCGCCGAT CCCAACCCGC CCGCCGCCGA CCGGCTCCCC CTGGGCGCCA CGCCGCTGTT TGCCGTCGCC GTCGGGCTTA TCGTCATCAA CCTGTTCGGC ATCCAGCCGC TCATTGCCGA GATCGCCGCG AGCATTGGCT GGACCACCGC CGCCGCTGGC TTGCTCGTCA CCGCCACGCT CATCGGCTAT GGCATCGGTC TGTTGCTGCT GATGCCGTTG ACCGACCTGC AGGACAACCG CGCGCTGGCC TCGCGCACGC TGTGGGGCGC GGTGGCTTCG CTGGCGCTGA CCACCGTCGC GCACAGCGGC CAGGTACTGA TGCTCGCCGC CTTCGCCATC GGCCTGACGT CGACTGTCAT TCAGATGCTG ATTGCACTGG CGGGGCGCTT GGCCGCCGAC CAGCGGCGCG GGCGCGTGCT GGGCGACATC ATGATCGGCC TGAACCTGGG CATCCTGCTC TCCCGCCCGG CCGCCAGCTT CATCGCAGCG CAGTGGGGGT GGCGGGCGTT TTACGGTGCT TCTGGGGTGG CGATTGCCGT GCTGGCCGTC CTGCTGCCGC GCGTGATGCC GACCTTCGTG CCGCCGCGCA CGTTGTCATA CGGCGCGCTG CTGGGCTCGT ACGGCAACCT GCTGCGCAGA GAGCCGGTGT TGCGTCGCCG TGCCGCTACG CAGGCCTTGC TGATGGCGGC GTTCACGCTG TTCTGGACGG CTGTGGCGCT GCGGTTGGTG GCAGCGCCGT TCCATCTTTC GCAAAATGGC ATCGGGATCT TCGCGCTGTG CGGTGCGGCC GGTGTCGTGG CCGCGCCGAT TGCCGGGCGG CTGGCGGATC GCGGTCTCGT GCGCGTGGGT ACGCTGCTCG CGCACGGCTG CGCGGCAACG GGTTTGCTCG TGGCGCTTGC TTCGGCGCTG CTGCCGGGCC TGAGCGTTCC CGTCATGTTG GCGATGCTCG TGGCTGCGGC GCTGTTGCTC GATTTCGGCG CCATCGGCGA CCAGGCGCTT GGCCGCTACA TGGTCAACAC GCTGTCGACC GAGATCCGGG GGCGCGTGAA CGGTCTGTAC ACCGGAGCGT TCTTCTTCGG CGCGGCAGCA GGCGGTGGAT TGGCCGGCGT GGCGTGGGCC CGCGCCGGAT GGATCGGCGT ATCCGTTCTT GCGCTCGGGT TTGTGGCCGC GGCTGCACTT GTCTTCGTAT GGCCAGCGCG TGCGCCGCGT GCCATTGGCG CCACACCGCG CCGTTGCTGA
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Protein sequence | MTTEAPAIAD PNPPAADRLP LGATPLFAVA VGLIVINLFG IQPLIAEIAA SIGWTTAAAG LLVTATLIGY GIGLLLLMPL TDLQDNRALA SRTLWGAVAS LALTTVAHSG QVLMLAAFAI GLTSTVIQML IALAGRLAAD QRRGRVLGDI MIGLNLGILL SRPAASFIAA QWGWRAFYGA SGVAIAVLAV LLPRVMPTFV PPRTLSYGAL LGSYGNLLRR EPVLRRRAAT QALLMAAFTL FWTAVALRLV AAPFHLSQNG IGIFALCGAA GVVAAPIAGR LADRGLVRVG TLLAHGCAAT GLLVALASAL LPGLSVPVML AMLVAAALLL DFGAIGDQAL GRYMVNTLST EIRGRVNGLY TGAFFFGAAA GGGLAGVAWA RAGWIGVSVL ALGFVAAAAL VFVWPARAPR AIGATPRRC
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