| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2613 |
|---|
| Symbol | |
|---|
| ID | 8020277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2750976 |
|---|
| End bp | 2753072 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644831393 |
|---|
| Product | ribonuclease II |
|---|
| Protein accession | YP_002982556 |
|---|
| Protein GI | 241664196 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.249804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTGC TGTTCGAAGA AGGCGGCGAG ATCCGCGCGG GCACCGTCTT GTCCCAACAG
GGCGAGGCCT ATCAGGTCGA GTTGCCGAGC GCCAAGCGCA CCAAGGTCAA GTCGCGCGAC
GTGTTGCTGC AATTCGCGCA GCCGTCTGCC GGTGAGTTGT CGCAGGCAGC CCAGGCGCTG
TCGGCGGAGA TCGACCTCGA TTTTCTGTGG GAATGCGCTT CGGCCGATGA ATTCGGCTTT
ACCGACCTGG CAGGCGAATA CTTTGGTGCC GGCGCCAATG CCACGCAGCA AGCCGCGCTG
GCCATCGCGC TGCATGGCTC GCCGATCTAC TTCCGCCGCA AGGGCCGCGG CCGCTATCAG
CGCGCGCCCG AAGACCAGCT GAAGGCCGCG CTTGCAGGTT TGGAGCGCAA GAAGCAGCAA
GCCGCCCTGC AGGCCGAATA CGAAGCCGAG CTGAAGGCGA TGCGCCTGCC CGAGGCCTTC
CGCGGCAAGA CGCTGCAGCT GCTGTTCAAG CCGGACAAGA ACAGCCTCGA ATACAAGGCG
CTCGATGCGG CGTGCACCGC GCTGGGCCTG TCGCCGATGC GCCTGATGGT GGCGGTCGGC
GGCATCGCCA ACGCTCGCGC GCTGCACGAG GCCCGCTTCC TCTCGGAATG TTTCCCGAAG
GGCACCGGCT TCCCGGATGT GACCGTGCCG GAACCGGCGA TGGAGCTGCC TGCCGCCGAC
GTGCGCGCCT TCTCGATCGA CGACGTGACC ACCACGGAAA TCGACGACGC CATCTCGGTG
ACCCCGATTG ATGACGCCAC CGTGCGCATC GGCATCCATA TTGCCGCGCC GGGCTTCGGC
ATCCAGCGCG GCGAACCGCT GGACGTGATT GCGCGTCAGC GTTTGTCCAC CGTGTATTTC
CCCGGCGACA AGATCACGAT GCTGCCGGAG TCGGTGGTGG ATCGTTACAC GCTGCAGGAA
GGGCGCGCAT GCCCGGCGCT GTCGCTGTAT GTGACGGTCG ACCGTGCAAC GTGGGCGGTC
AGCGCCAGCG AGACGCGCTG CGAAACCGTG ACCGTGGCGG CCAACCTGCG CCACAACCTG
CTCGACGACG TGATCACCGC CGACGCGCTC GCCGATGGCT CGGGCGACTA TCCGTTCAAG
GCCGAGCTGG CGGTGCTGTG GCCGTTTGTG TGCGCGTTGT ATGACGGCCG CCAGCAGGCC
CGCATCGCCA GCGGCCTCAA GCCGGAGGGC GCGCAGAAGG GCGATTACTC GTTCTACATC
GATCCGATTC CCGAGGCGGA AGGCGGCGGC GAGCGCGTGC GGATCGAACA GCGCAAACGC
GGTTCGCCGC TGGACAAGAT CGTCGCCGAG CTGATGATCC TCGCCAACAG CACGTGGGGC
CGCATGCTGG CCGACGCCGG GGTGCCGGGC ATCTATCGCA CGCAGAAGGC GTGGGGCATG
CACCGCACGC GCATGCAGAC GTATCCGGCG CCGCATGAAG GCCTGGGCGT GGCGCAGTAC
GCGTGGAGCA CCTCGCCGCT GCGTCGCTAT GTCGATCTGG TCAATCAATG GCAGATCGCA
GCGGTGGCGC AGCATGGCGT GACGGCCAAG CTGATCGCGC CATTCAAGCC CAAGGATGCC
GACCTGCTGG CTGCCGTGGC CGACTTCGAA GCCACCTACG CTGCCTATGC CGACCACCAG
TCGACCATGG AGCGCTATTG GTGCCTGCGC TGGCTCCAGC AGGAAAACCG AACGCGCATG
CAGGCCGTGG TGCTCAAGGA AGGCGCCGTG CGATTCGCCG ACATTCCGCT GGTGACGAAG
GTGCCGGAAC TGGCGCAAAC GCCACGCGGT ACGCACGTCG TGCTCGATAT CCTGGACACC
GACGAGATCA GCCTGGAAGT GTCGTGCCGC GTGGTTGAAA TCCTCGCGCC CGAAGCGGGC
GCACAAGCTG AAGCCGAAGC CATTGAAGAA GAACTGGCCG CGGCAGAGGC TGAGGCTGAT
GTGCCGGCTG AGCCACAACC TGCCGCGGAT GGGGAAGAGG CTCGCGCAGA AGCCGACGCG
GCTGTGGCGC CGCCGCCGCA AGACGGCGAG AGCGGTGGAA CGCCTGCCGC TGCCTAA
|
|---|
| Protein sequence | MQLLFEEGGE IRAGTVLSQQ GEAYQVELPS AKRTKVKSRD VLLQFAQPSA GELSQAAQAL
SAEIDLDFLW ECASADEFGF TDLAGEYFGA GANATQQAAL AIALHGSPIY FRRKGRGRYQ
RAPEDQLKAA LAGLERKKQQ AALQAEYEAE LKAMRLPEAF RGKTLQLLFK PDKNSLEYKA
LDAACTALGL SPMRLMVAVG GIANARALHE ARFLSECFPK GTGFPDVTVP EPAMELPAAD
VRAFSIDDVT TTEIDDAISV TPIDDATVRI GIHIAAPGFG IQRGEPLDVI ARQRLSTVYF
PGDKITMLPE SVVDRYTLQE GRACPALSLY VTVDRATWAV SASETRCETV TVAANLRHNL
LDDVITADAL ADGSGDYPFK AELAVLWPFV CALYDGRQQA RIASGLKPEG AQKGDYSFYI
DPIPEAEGGG ERVRIEQRKR GSPLDKIVAE LMILANSTWG RMLADAGVPG IYRTQKAWGM
HRTRMQTYPA PHEGLGVAQY AWSTSPLRRY VDLVNQWQIA AVAQHGVTAK LIAPFKPKDA
DLLAAVADFE ATYAAYADHQ STMERYWCLR WLQQENRTRM QAVVLKEGAV RFADIPLVTK
VPELAQTPRG THVVLDILDT DEISLEVSCR VVEILAPEAG AQAEAEAIEE ELAAAEAEAD
VPAEPQPAAD GEEARAEADA AVAPPPQDGE SGGTPAAA
|
|---|
| |