| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2534 |
|---|
| Symbol | |
|---|
| ID | 8020198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2663881 |
|---|
| End bp | 2665524 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644831315 |
|---|
| Product | natural resistance-associated macrophage protein |
|---|
| Protein accession | YP_002982478 |
|---|
| Protein GI | 241664118 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
|---|
| TIGRFAM ID | [TIGR01197] NRAMP (natural resistance-associated macrophage protein) metal ion transporters |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.608693 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATT TCGCTTCGGG CATCGACGCA CCACCGCGTC ACGCCGCGCT CGACGACGCC
CATGTGGGCG ACATCCGTGG TGCACTCGGC ACCATCGCCC ACCATGACAC CGGCGCACGG
GATAGCTGGC GTGCGCGTTT GCGGACGCTG CTCGCCATCC TCGGCCCCGG CCTGATCGTC
ATGGTCGGCG ACAACGATGC CGGTGCCTTC GGCACCTACA CGCAGGCCGG GCAGAACTAC
GGCACCACGC TGCTCTGGAC GTTGCTGTTG CTCATCCCTG TGCTTTACGT GAACCAGGAG
ATGGTGCTGC GCCTGGGCGC CGTCACCCGT GTGGGCCATG CGCGGCTCAT CTTTGCGCGC
TTCGGCAAGT TCTGGGGCAG CTTCTCCGTC ATCGATCTGT TTCTCGTGAA TGCGCTGACG
CTGGTGACGG AGTTCATCGG CATCAGCCTC GCGCTGGAGT ACCTCGGCAT CCCGCGCCAT
TGGGGCGTGT GTGCGGCGGC CGCGCTGGTG ATGCTGGCCG CGTCCACCGG AGACTTCCGC
CGCTTCGAGC GCTTTGCGCT GGCGCTGGTG GCCGGCAGCC TCACGCTCAT TCCCGTGTTC
GTGATGGTGC ATCCGCCGAT GGGGCAGGTG GCGCGCGACT TTTTCGTGCC TGCGCTGCCG
ACCGGCGCAC CGCTGGCGGA GGTGATGCTG CTGATCATCG CCATCGTTGG GACGACGGTG
GCGCCGTGGC AGTTGTTCTT CCAGCAGAGC TACGTGATCG ACAAGCGCAT CACCGCGCGC
TTCATCCGCT ATGAGCGTGC GGACCTGTGG CTGGGCATCG TGCTGGTGAT TGCCGGAGCG
GTGGCGATGA TCGCGTTCAG CGCGCAGGCC TTCCACGGCA CGCCCGCGTT CGGCAACTAC
ACCGATGCGC TGGGTACGGC GAAAGGGTTG GAAGCCCATT CGGGCCGCTG GGCCGGGGTG
CTGTTTGCGA TTGCGCTGCT GGATGCCAGC ATCATCGGCG CGTGCGCGGT GTCGTTGTCC
ACGGCGTATG CGATTGGTGA TGTGTTTGCC GTGCGGCACT CGCTGCATCG CAAGCCGACG
GAGGCCAAGG GCTTCTACGC GATCTACTTC GGGCTGACCT TGCTGGCTGC CGGCTTGGTG
GTGACGCCTG GTGTACCGCT GGGGTTGCTG ACCAACGCGG TGCAGTCGCT GGCCGGTGTG
CTGCTGCCAA GCGCGACGGT GTTTCTGCTG CTGTTGTGTA ACGACAAGGC CGTGCTCGGC
CCATGGACGA ACGGCCGCGC CATGAACATC TTCACGGGCG GCGTGGTGGC GGTGCTGGTG
ATGCTGTCCG TCATCCTCAC TGCGGCGGTG CTGTTTCCCG GCATTGGCGA GTTCGAGATC
GGCGCGATCC TGGTGGGCGG TTCGCTCATC GCCATCGTCA TGTCACTGGT GCTGTGGCGC
ATCGAGCGAC GCACGTATCG GCCGCATCAT CCGCAACGTG TGAGCGTGCT TAATCGTGAC
CACTGGACGA TGCCGCCGCT GGAGCAGCTC ACACCGGCGC GGTGGACGCC GCTCAAACGC
ACGTGGATGT TCGTGCTGCG CGGCTACCTT GTGGTGGCGG CGGGGCTGGT GCTGGTGCGG
ATCGCCGGAC TGCTGACAGG GTAA
|
|---|
| Protein sequence | MTHFASGIDA PPRHAALDDA HVGDIRGALG TIAHHDTGAR DSWRARLRTL LAILGPGLIV
MVGDNDAGAF GTYTQAGQNY GTTLLWTLLL LIPVLYVNQE MVLRLGAVTR VGHARLIFAR
FGKFWGSFSV IDLFLVNALT LVTEFIGISL ALEYLGIPRH WGVCAAAALV MLAASTGDFR
RFERFALALV AGSLTLIPVF VMVHPPMGQV ARDFFVPALP TGAPLAEVML LIIAIVGTTV
APWQLFFQQS YVIDKRITAR FIRYERADLW LGIVLVIAGA VAMIAFSAQA FHGTPAFGNY
TDALGTAKGL EAHSGRWAGV LFAIALLDAS IIGACAVSLS TAYAIGDVFA VRHSLHRKPT
EAKGFYAIYF GLTLLAAGLV VTPGVPLGLL TNAVQSLAGV LLPSATVFLL LLCNDKAVLG
PWTNGRAMNI FTGGVVAVLV MLSVILTAAV LFPGIGEFEI GAILVGGSLI AIVMSLVLWR
IERRTYRPHH PQRVSVLNRD HWTMPPLEQL TPARWTPLKR TWMFVLRGYL VVAAGLVLVR
IAGLLTG
|
|---|
| |