Gene Rpic12D_2507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2507 
Symbol 
ID8020171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2632254 
End bp2632970 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content66% 
IMG OID644831288 
Productalanine racemase domain protein 
Protein accessionYP_002982451 
Protein GI241664091 
COG category[R] General function prediction only 
COG ID[COG0325] Predicted enzyme with a TIM-barrel fold 
TIGRFAM ID[TIGR00044] pyridoxal phosphate enzyme, YggS family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.813169 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCAA TCGTCGCCAA CTTGCAAGCC GTGCGTCAAC GGATCACAAC GGCCTGCACA 
CTGGCTTCGC GCGATGCTGC GGGTGTCACA TTGCTGGCCG TTTCCAAGAC GTTCGACGCC
GATGCCATAC GCGCCGCGCA TGCCGCCGGG CAACGCCTCT TCGGCGAAAA CTACGTGCAG
GAAGGCGTTG CCAAGATCGA CGCGCTGGCC GATCTGCGCA AGGGCACCGA CCCGATCCGC
TGGCACTTCA TCGGCCCCCT GCAGAGCAAC AAGACGCGCG CCGTGGCCGA ACAGTTCGAC
TGGGTGCACA GCGTCGATCG CCTGAAGATC GCCGAGCGGC TGTCGGCGCA GCGCCCGGAC
ACCTTGCCGC CGCTGCAGGT CTGTCTCGAG ATCAATATCA GCCGCCAGGC CAGCAAACAT
GGTCTGCTCC CCGATTTCGA TGAAGTGCTT GCCGTGGCAC AAGCCGTCTT GGCGCTGCCC
CGTCTGCAAT TGCGCGGCCT GATGGCCGTG CCCGAGCCGA GCGATGACCC CGTGGCGCAG
CGCAAGCCGT TTGCTGATCT GCGTGCCCTG GCAGGCCGGT TGCGCGAGGC CGGCATCCCG
CTCGATACGC TCTCGATGGG CATGTCCGCC GACCTGGAAG ACGCGATTGC CGAAGGCGCC
ACGATTGTGC GCGTCGGCAG CGCCATCTTC GGCGCGCGGC ATTACGCCAA CGCCTGA
 
Protein sequence
MSAIVANLQA VRQRITTACT LASRDAAGVT LLAVSKTFDA DAIRAAHAAG QRLFGENYVQ 
EGVAKIDALA DLRKGTDPIR WHFIGPLQSN KTRAVAEQFD WVHSVDRLKI AERLSAQRPD
TLPPLQVCLE INISRQASKH GLLPDFDEVL AVAQAVLALP RLQLRGLMAV PEPSDDPVAQ
RKPFADLRAL AGRLREAGIP LDTLSMGMSA DLEDAIAEGA TIVRVGSAIF GARHYANA