| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1703 |
|---|
| Symbol | |
|---|
| ID | 8019356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1811803 |
|---|
| End bp | 1812444 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644830485 |
|---|
| Product | Lysine exporter protein (LYSE/YGGA) |
|---|
| Protein accession | YP_002981658 |
|---|
| Protein GI | 241663298 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1279] Lysine efflux permease |
|---|
| TIGRFAM ID | [TIGR00948] L-lysine exporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.110191 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.952873 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAT CGCTTGCAAC TTCCTCATCC GTCTTCCTGC AGGGCGTGGC GCTGAGCCTT
GGTCTGATCG TGGCCATTGG CGCGCAGAAC GCTTTTGTGC TGCGTCAGGG GCTGCGCCGC
GAACACGTGG GCAGCGTGGT GCTGTTCTGT GCGATGACCG ATGCGCTGCT GATTCTGGCG
GGCGTGCTCG GTATGGCGCA GGCGTTGGGT GAACGACCCA GCCTCGCGCG ATTCCTCGCG
TTGGCGGGCG CTGCATTCCT GTTGCTGTAT GGCGTGCAGG CGCTCCGGCG GGCGCGGTAT
TCCAACCAGT TGCGGGCCGC CGCGGGCGGA GATGGCCTCA GCCGGCGCGC AGCGTTGGCG
CAGGCGGCAG CTTTTACGCT GCTGAATCCG CATGTGTATC TGGACACGGT GCTGCTCGTG
GGCAGCATTG GTGCGCAGCA AGCCTCGGCA TTGCGCAGCT GGTTTGTGGC GGGCGCGGGG
TCGGCCAGCC TGTTCTGGTT TGTGTCGCTG GGGTTCGGCG CGCGCTGGCT CGCACCGTGG
TTTGCCCGGC CCAAGGCGTG GCAGGTGTTG GATGGGTTGA TTGGCGTGAC GATGCTGGTG
CTGTCTGCCT TGCTGCTGCG TCACGTCCTG CGCGGGTTTT GA
|
|---|
| Protein sequence | MTTSLATSSS VFLQGVALSL GLIVAIGAQN AFVLRQGLRR EHVGSVVLFC AMTDALLILA
GVLGMAQALG ERPSLARFLA LAGAAFLLLY GVQALRRARY SNQLRAAAGG DGLSRRAALA
QAAAFTLLNP HVYLDTVLLV GSIGAQQASA LRSWFVAGAG SASLFWFVSL GFGARWLAPW
FARPKAWQVL DGLIGVTMLV LSALLLRHVL RGF
|
|---|
| |