| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1618 |
|---|
| Symbol | |
|---|
| ID | 8019268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1717189 |
|---|
| End bp | 1718874 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644830398 |
|---|
| Product | dihydrolipoamide acetyltransferase |
|---|
| Protein accession | YP_002981574 |
|---|
| Protein GI | 241663214 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0710124 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.720466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG TCGTAGAAAT CAAGGTGCCG GACATCGGCG ACTACAAAGA CGTCCCGGTG
ATCGAAGTGC TGGTCAAGGC GGGCGATACC GTCAACGCCG AGGATTCGCT GGTCACGCTG
GAATCGGACA AGGCGACCAT GGACGTGCCC TCGCCCAAGA GCGGCGTCGT CAAGGAAGTG
AAGATCAAAG TGGGTGACAC CGTGTCGGAA GGCTCGCTGG TGCTGCTGCT CGAAGAGCAG
GGCGCTGCTG CCGCACCGGC CCCGGCACCT CAAGCTGCGC CCGCACCGGC TCCGACCGCT
GCTGCACCGG CACCCGCACC GGTCGCGCAA GCTCCGGCCG CTGCGCCGGC TGCCGCTGGC
GGCGGCACGA TCGAAGTGAA AGTGCCGGAC ATCGGCGACT ACACCGACGT GCCGGTCATC
GAGATCAGCG TGAAGGTGGG CGACAAGGTG GAAGCCGAGC AGTCCCTGAT CACGCTGGAG
TCGGACAAGG CCACGATGGA TGTGCCGTCG CCGGCCGCCG GTACCGTCAA GGACATCCGC
GTGAAGGTGG GCGATGCCGT GTCGCAAGGC ACGCTGATCG TCGTGCTGGA GGGTGCTGGC
GGTGCTGCCG CTGCGCCGGC ACCTGCGCAA GCCCCGGTAC CGGCACCCAC AGCCGCACCG
GCGGCCGCTG CACCGAGCCC GGCCCCTGCG GCTGCGCCCG CAGCTGCTCC GGCCGCAGCG
CCCGCTACAT ACACCGCCGA CACCGTCGGT ACAGTGGGCA AGGCGGCCCA CGCCAGCCCC
TCGGTGCGCA AGTACGCGCG TGAACTGGGC GTGAACGTCA ACCTGGTTGG CGGCACCGGT
CCGAAGAACC GTATCACGCA GGAAGACGTG CAGCGCTACG TCAAGAGCGT GATGAGCGGC
CAGGCCGCTG CGCCGGGCAA GGCTGCCGCA ACTGCGCCGG CCGGCGGTGG CGAGCTGAAC
CTGCTGCCGT GGCCGAAGGT GGACTTCACC AAGTTCGGCC CGGTCGATCC GAAGCCGCTG
TCGCGCATCA AGAAGATTTC GGGTGCGAAC CTGCACCGCA ATTGGGTCAT GATCCCGCAC
GTCACGAACA ATGACGAAGC GGACATCACC GAGCTGGAAG CCTTCCGCGT GCAGATGAAC
AAGGACCACG AAAAGGCCGG CGTGAAATTC ACGATGCTGG CGTTCGTGAT CAAGGCAGTC
GTGGGTGCGC TGAAGAAGTT CCCGACCTTC AACGCGAGCC TGGACGGCGA CAACCTGGTC
TTCAAGCAGT ATTTCCACAT CGGCTTTGCG GCTGATACGC CCAACGGGCT GGTGGTGCCG
GTGATCCGCG ATGCGGACAA GAAGGGGCTG ATCGACATCG CCAAGGAAAT GGCGGACCTC
TCGAAGGCTG CGCGCGAAGG GAAACTCAAG CCGGACCAGA TGCAGGGCGG CTGCTTCTCG
ATCTCGTCGC TGGGCGGTAT TGGCGGCACG CATTTCACGC CGATCATCAA CGCACCGGAA
GTGGCCATCC TCGGCCTGTC GCGCGGTTAT CAGAAGCCGG TGTGGGACGG CAAGCAGTTC
GTGCCGCGCC TGACGCTGCC GCTGTCGCTG TCGTACGATC ACCGCGTGAT CGACGGCGCC
GAGGCTGCGC GCTTCAACGC GTATCTGGCC AGCGTGCTGG CGGACTTCCG CCGCGTCAGC
CTGTAA
|
|---|
| Protein sequence | MSQVVEIKVP DIGDYKDVPV IEVLVKAGDT VNAEDSLVTL ESDKATMDVP SPKSGVVKEV
KIKVGDTVSE GSLVLLLEEQ GAAAAPAPAP QAAPAPAPTA AAPAPAPVAQ APAAAPAAAG
GGTIEVKVPD IGDYTDVPVI EISVKVGDKV EAEQSLITLE SDKATMDVPS PAAGTVKDIR
VKVGDAVSQG TLIVVLEGAG GAAAAPAPAQ APVPAPTAAP AAAAPSPAPA AAPAAAPAAA
PATYTADTVG TVGKAAHASP SVRKYARELG VNVNLVGGTG PKNRITQEDV QRYVKSVMSG
QAAAPGKAAA TAPAGGGELN LLPWPKVDFT KFGPVDPKPL SRIKKISGAN LHRNWVMIPH
VTNNDEADIT ELEAFRVQMN KDHEKAGVKF TMLAFVIKAV VGALKKFPTF NASLDGDNLV
FKQYFHIGFA ADTPNGLVVP VIRDADKKGL IDIAKEMADL SKAAREGKLK PDQMQGGCFS
ISSLGGIGGT HFTPIINAPE VAILGLSRGY QKPVWDGKQF VPRLTLPLSL SYDHRVIDGA
EAARFNAYLA SVLADFRRVS L
|
|---|
| |