| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1295 |
|---|
| Symbol | |
|---|
| ID | 8018940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1367754 |
|---|
| End bp | 1369058 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644830075 |
|---|
| Product | isocitrate lyase |
|---|
| Protein accession | YP_002981256 |
|---|
| Protein GI | 241662896 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2224] Isocitrate lyase |
|---|
| TIGRFAM ID | [TIGR01346] isocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0485225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.330509 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGCG AACTCGAAGT GCAAAAGCTG CAGAAGGAAT GGGATACCAA CCCGCGTTGG
AAGGGCATCA AGCGTGGTTA CACCGCTGAA GATGTCGTGC GCCTGCGTGG TTCGCTGCAG
ATCGAACATA CGCTGGCCAA GCGTGGTGCC GAAAAGCTGT GGAACCTGAT CAACAACGAA
CCCTTCGTCA ACGCTCTGGG CGCACTGACG GGCAACCAGG CCATGCAGCA GGTCAAGGCC
GGATTGAAGG CGATCTATCT GTCGGGCTGG CAGGTCGCGG GTGATGCCAA CAGCAACGGC
GAGATGTATC CGGACCAGTC GCTGTATTCG GTGGACTCGG TGCCCAAGGT CGTCAAGAAG
ATCAACAACA CGTTCCAGCG CGCTGACCAG ATCCAATGGT CGGAAGGCAA GGACGACATC
GACTTCTTCG CCCCGATCGT GGCGGACGCC GAAGCGGGTT TCGGCGGCGT GCTGAACGCG
TTCGAACTGA TGAAGGCCAT GATCGAGGCC GGTGCGGCAG GCGTGCACTT TGAAGACCAG
CTGGCCGCCG TGAAGAAGTG CGGCCACATG GGCGGCAAGG TTCTGGTGCC GACCCGTGAA
GCCGTGAGCA AGCTCGTCGC CGCGCGTCTG GCTGCCGACG TGATGGGCGT GCCGACCGTG
CTGATCGCTC GCACCGACGC TGAAGCTGCC GACCTGTTGA CTACCGATGT GGACGAGAAC
GACAAGCCGT TTTGCACCGG CGAGCGCACC GTTGAAGGCT TCTACCGCAC CAAGCCGGGT
CTGCAGCAAG CCATCTCGCG CGGTCTGGCC TACGCGGAAG TGGCTGACCT CGTGTGGTGC
GAAACCGGCA AGCCGGATCT TGAATACGCC AAGAAGTTTG CGGAAGCCAT TCACGCGAAG
TTCCCGGGCA AGATGCTGGC CTACAACTGC TCGCCGTCGT TCAACTGGAA GAAGAATCTG
GACGACGTGA CCATCGCCCG GTTCCAGAAG GAACTCGGCG CGATGGGCTA CAAGTTCCAG
TTCATCACGC TGGCCGGTTT CCACGCCCTG AACTACTCGA TGTTCAACCT GGCGTACGGC
TATGCCCGCA ACCAGATGAG CGCTTTCGTG GAGCTGCAAG AGGCTGAATT CAAGGCGGCG
GAAAAGGGCT TCACCGCGGT GAAGCACCAG CGCGAAGTCG GCACGGGCTA CTTCGATGCC
GTGACGCAGA CCATCGAGCG CGAGGCGTCG ACCACGGCGC TCAAGGGCTC GACCGAAGAC
GAACAATTCT TCGAAGAAAC GGCGCAAGCC AAGAAGGTTG CCTGA
|
|---|
| Protein sequence | MSRELEVQKL QKEWDTNPRW KGIKRGYTAE DVVRLRGSLQ IEHTLAKRGA EKLWNLINNE
PFVNALGALT GNQAMQQVKA GLKAIYLSGW QVAGDANSNG EMYPDQSLYS VDSVPKVVKK
INNTFQRADQ IQWSEGKDDI DFFAPIVADA EAGFGGVLNA FELMKAMIEA GAAGVHFEDQ
LAAVKKCGHM GGKVLVPTRE AVSKLVAARL AADVMGVPTV LIARTDAEAA DLLTTDVDEN
DKPFCTGERT VEGFYRTKPG LQQAISRGLA YAEVADLVWC ETGKPDLEYA KKFAEAIHAK
FPGKMLAYNC SPSFNWKKNL DDVTIARFQK ELGAMGYKFQ FITLAGFHAL NYSMFNLAYG
YARNQMSAFV ELQEAEFKAA EKGFTAVKHQ REVGTGYFDA VTQTIEREAS TTALKGSTED
EQFFEETAQA KKVA
|
|---|
| |