| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1271 |
|---|
| Symbol | |
|---|
| ID | 8018916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1343571 |
|---|
| End bp | 1346159 |
|---|
| Gene Length | 2589 bp |
|---|
| Protein Length | 862 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830051 |
|---|
| Product | ATP-dependent chaperone ClpB |
|---|
| Protein accession | YP_002981232 |
|---|
| Protein GI | 241662872 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.387931 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTGG ACAAATTGAC CACCCGCTTC CAGGAAGCGC TGGCCGACGC GCAGAGCCTG
GCGCTGGGCA ACGACAATCC GTACATCGAA CCGGTCCACC TGCTGCTGGC CATGCTGCGC
CAGCCGGATG GGGCCACCAA GAACCTGCTG GCCCGTGCGG GCGTCAATAC CGGCGCCCTG
GACACGGCGC TGGACCGCGC CATCAAGCAC CTGCCGCAGG TGCAGGGTGG CGAACAGGTG
CAGGTGGGGC GAGACCTCGG CAGCCTGCTG CAGGCGACTG AGAAAGAGGG CATCAAGCGC
GGCGATCAGT TCATCGCCAG CGAGCTGTTC CTGCTGGCCG TGGCCGACGA CAAGGGCGAG
GCTGGCCGCA TTGCGCGCGA GCACGGCCTG TCGCGCAAGC CGCTCGAAGC CGCGATCGAC
GCTGTACGCG GCGGCCAGAC CGTCGGCAGC GCCGAAGCCG AGAGCCAGCG TGAAGCGCTC
AAGAAGTACA CCATCGACCT CACCGAGATG GCCCGAATCG GCAAGCTCGA CCCCGTCATT
GGCCGCGATG ATGAAATCCG TCGAGCCATC CAGATCCTGC AGCGCCGCAC CAAGAACAAC
CCGGTGCTGA TCGGCGAGCC GGGCGTCGGC AAGACGGCCA TCGTCGAAGG GCTGGCGCAG
CGCATCGTCA ATGAAGAGGT GCCTGAAAGC TTGAAGAACA AGCGTGTGCT GGTGCTCGAC
ATGGCGGGTC TGCTGGCCGG TGCCAAGTAT CGCGGCGAGT TTGAGGAGCG CCTGAAGGCG
GTGCTCAACG ACATCGCCAA GGAAGAAGGC CGGACCATTC TCTTCATCGA CGAAATCCAC
ACGATGGTGG GCGCGGGCAA GGCCGAAGGC GCGATGGATG CCGGCAACAT GCTCAAGCCG
GCGCTTGCGC GCGGCGAGCT GCATTGCATC GGCGCGACCA CGCTGGATGA ATACCGCAAG
TACATCGAGA AGGACGCCGC GCTGGAGCGC CGCTTCCAGA AGGTGCTCGT GGGCGAGCCG
ACCGTGGAGG CAACCATCGC CATCCTGCGT GGCTTGCAGG AGAAGTACGA ACTGCACCAC
GGTGTGGAGA TTACCGACCC GGCGATCGTG GCCGCGGCTG AACTCAGCCA CCGCTACATC
ACCGATCGCT TCCTGCCGGA CAAGGCCATC GACCTGATCG ACGAGGCTGC GGCGCGCATC
AAGATGGAAA TCGACTCGAA GCCCGAGGCG ATGGACAAGC TCGACCGCCG CCTGATCCAG
CTCAAGATCG AGCGCGAAGC CGTCAAGAAG GAAACCGACG AGGCATCGCA GAAGCGCCTG
GAGCTGATCG AGCAGGAAAT CGAGCGTCTG CAGAAGGAAT ACGCCGATCT GGATGAAATC
TGGAAGGCCG AGAAGGGCGC CGCGCAAGGT GCGGCTGCGC TCAAGGAAGA GATCGACAAG
ATCAAGCTGG AGATCACCAA GCTGCAGCGC GAAGGCAAGC TCGAGAAAGT GGCCGAACTG
CAATACGGCA AGCTGCCCGA GCTGGAAGGC AAGCTGAAGG CCGCCACCGC CGCCGAGTCG
GCCGGCCAGA AGCAGCCTAA CAAGCTGCTG CGCACGCAGG TGGGCGCGGA AGAGATTGCC
GAAGTCGTCA GCCGCGCCAC GGGCATCCCC GTGGCGAAGA TGATGACCGG CGAGCGCGAG
AAGTTGCTGA AGATGGAAGA CCGCCTGCAC GAACGCGTGG TCGGCCAGGA CGAAGCCGTG
CGTCTGGTGT CGGATGCCAT CCGCCGCTCA CGCGCCGGCA TTGCGGACGA GAACAAGCCC
TATGGCTCGT TCCTGTTCCT GGGTCCGACG GGCGTCGGCA AGACGGAGCT GTGCAAGGCG
CTGGCAGGGT TCCTGTTCGA TTCGGAAGAG CACCTCATCC GCATCGACAT GAGCGAATTC
ATGGAGAAGC ATTCCGTGAG CCGGCTGATC GGCGCGCCGC CGGGCTATGT CGGCTACGAG
GAGGGCGGTT ACCTGACCGA AGCCGTGCGC CGCAAGCCGT ACAGCGTGGT GCTGCTCGAT
GAAGTGGAGA AGGCGCACCC GGACGTCTTC AACGTGCTGC TGCAAGTGCT GGACGATGGT
CGCCTGACCG ACGGCCAGGG CCGCACGGTC GACTTCAAGA ACACGGTGAT CGTGATGACG
TCGAACCTCG GCTCGCAGCT CATCCAGCAG ATGGCGACCG AACCGGCGGA CGTGATCAAG
GGTGCCGTGT GGCAAGAAGT GAAGACGCAT TTCCGCCCCG AGTTCCTCAA CCGGATCGAC
GAGGTGGTGG TGTTCCACGC ACTGGACCAA CGCAACATCG AATCGATCGC GCGGATCCAG
CTCAAGCGTC TGTCTGCACG CCTGGCGCAG ATGGACCTGG CGCTGGAGAT CAGCGACGAG
GCGGTGGCCA AGCTGGCCTC TGCCGGTTAC GACCCGGTGT TTGGGGCACG GCCGTTGAAG
CGGGCCATCC AGCAGCAGAT CGAGAATCCG GTGGCACGGA TGATCCTGGA GGGCAGGTTC
GCGCCCAAGG ATGTGGTGCC GGTGGATTAT CGGGATGGGC AGTTTTCGTT TGAGAGGGTT
GTGCACTGA
|
|---|
| Protein sequence | MRLDKLTTRF QEALADAQSL ALGNDNPYIE PVHLLLAMLR QPDGATKNLL ARAGVNTGAL
DTALDRAIKH LPQVQGGEQV QVGRDLGSLL QATEKEGIKR GDQFIASELF LLAVADDKGE
AGRIAREHGL SRKPLEAAID AVRGGQTVGS AEAESQREAL KKYTIDLTEM ARIGKLDPVI
GRDDEIRRAI QILQRRTKNN PVLIGEPGVG KTAIVEGLAQ RIVNEEVPES LKNKRVLVLD
MAGLLAGAKY RGEFEERLKA VLNDIAKEEG RTILFIDEIH TMVGAGKAEG AMDAGNMLKP
ALARGELHCI GATTLDEYRK YIEKDAALER RFQKVLVGEP TVEATIAILR GLQEKYELHH
GVEITDPAIV AAAELSHRYI TDRFLPDKAI DLIDEAAARI KMEIDSKPEA MDKLDRRLIQ
LKIEREAVKK ETDEASQKRL ELIEQEIERL QKEYADLDEI WKAEKGAAQG AAALKEEIDK
IKLEITKLQR EGKLEKVAEL QYGKLPELEG KLKAATAAES AGQKQPNKLL RTQVGAEEIA
EVVSRATGIP VAKMMTGERE KLLKMEDRLH ERVVGQDEAV RLVSDAIRRS RAGIADENKP
YGSFLFLGPT GVGKTELCKA LAGFLFDSEE HLIRIDMSEF MEKHSVSRLI GAPPGYVGYE
EGGYLTEAVR RKPYSVVLLD EVEKAHPDVF NVLLQVLDDG RLTDGQGRTV DFKNTVIVMT
SNLGSQLIQQ MATEPADVIK GAVWQEVKTH FRPEFLNRID EVVVFHALDQ RNIESIARIQ
LKRLSARLAQ MDLALEISDE AVAKLASAGY DPVFGARPLK RAIQQQIENP VARMILEGRF
APKDVVPVDY RDGQFSFERV VH
|
|---|
| |