| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1145 |
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| Symbol | rumA |
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| ID | 8018788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1210073 |
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| End bp | 1211563 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644829926 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_002981109 |
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| Protein GI | 241662749 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.297742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.611309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCCCT TGCCCTCATT TTGCCCAGGC TCGCTCGTGT CTCAAGCTGC ACCCAACGTC
ACGCCTTCCT CTTCTGCTCC AGCAAAGGTC GCGCCGGATA CGCCGCCGGC CAAGCCTCGT
GGCCGCCGCA AGCCAGAATT GCCCGTGGCC GGTCCGCTCG ACATCGTCTC GCTGGATGGC
GAGGCGCGCG GCATCGGCCG TTTGACCAAC GAGGACGGCA CGCCGGGGAA GGTTGTGTTC
GTGGAAGGCG CGTTGCCGGG GGAGCGGGTC ATGTACCGCA GTCACCGCGT AAAGCCGTCG
TACGAGCAAG CGAGTGTCGT CAACATTCTG CGCCAGTCTG CTTCACGCGT GACGCCGCAG
TGCAAGTTCT TTGGCGTGTG CGGTGGCTGC TCGATGCAGC ATCTGGATTC GCGCGCACAG
GTTGCGATCA AGCAGCGCGT GCTGGAAGAC GACCTGTGGC ATCTCGCCAA GCTGCGTCCG
GACGTGGTGT TCCGGCCAAT TGCCGGCCCG GATTGGGGCT ACCGCTATCG CGCGCGTTTG
ACCGTGCGCC ATGTTGCCGC CAAAGGCGGC GTACTGGTGG GTTTTCACGA GCGCAAGAGC
AGCTATGTGG CGGACATGAC GTCGTGCGAG GTGTTGCCGC CGCACGTGTC CGCGCTGCTG
GTTCCGTTGC GCGAATTGGT GGGCCGCCTG TCGATCGTAC AACGTATGCC GCAGATCGAA
CTGGCGGTCG GCCAGGATGT AACCGCGCTG GTGTTGCGCA ACCTAGAGCC GATTACCGCT
GAGGATGAGG CGGAGCTGCG TGCTTTCGCC GATCATCACA ACATCCAGTT CTGGCTGCAG
CCGAAGGGCC CGGATACGGT CTATCCGTTC TATCCGCTCG ATCGCACGCT GACGTACACG
TTGCCCGAGT TCGGCATCAC CATGCCGTTC AAGCCGACGG ATTTCACGCA GGTCAATCAC
CAGATCAACC GGGTGCTGAT GTCGCGCGCG CTGAAACTGC TCGACGCGCA GCCGGGCGAT
CGGCTGCTCG ACCTGTTCTG CGGTATCGGC AATTTCACGC TGCCGATGGC AACGCGTGCG
CGCGAAGTCA TGGGCATTGA AGGCAGCGAG GCGTTGACCA CGCGTGCGCT CGCCAACGCG
CAGCACAACG GCTTGGACGC GAAGACGAAG TTCGCTTGTC GCAACCTGTT TGAAGTGACT
GCTGACGATA TCGCCGCGTT GGGCAAGTTT GATCGCTGGC TGGTCGATCC GCCGCGCGAA
GGCGCACTGG CTGTGTCGAA GGCGCTGGCC GAGCTGTCGC AGCGCGGCGG TGAGGAGGCG
GATTTGCTGC CGAAGCGCAT CGTCTATGTG TCGTGCAATC CTGCGACGTT GGCGCGCGAC
GCGGGCTTGC TGGTGCACGA GGCAGGCTAC CGACTGGCGG GTGCGGGCGT GGTGAACATG
TTCCCGCACA CGTCGCATGT CGAGTCGATG GCGGTGTTCG AGCGCGACTG A
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| Protein sequence | MPPLPSFCPG SLVSQAAPNV TPSSSAPAKV APDTPPAKPR GRRKPELPVA GPLDIVSLDG
EARGIGRLTN EDGTPGKVVF VEGALPGERV MYRSHRVKPS YEQASVVNIL RQSASRVTPQ
CKFFGVCGGC SMQHLDSRAQ VAIKQRVLED DLWHLAKLRP DVVFRPIAGP DWGYRYRARL
TVRHVAAKGG VLVGFHERKS SYVADMTSCE VLPPHVSALL VPLRELVGRL SIVQRMPQIE
LAVGQDVTAL VLRNLEPITA EDEAELRAFA DHHNIQFWLQ PKGPDTVYPF YPLDRTLTYT
LPEFGITMPF KPTDFTQVNH QINRVLMSRA LKLLDAQPGD RLLDLFCGIG NFTLPMATRA
REVMGIEGSE ALTTRALANA QHNGLDAKTK FACRNLFEVT ADDIAALGKF DRWLVDPPRE
GALAVSKALA ELSQRGGEEA DLLPKRIVYV SCNPATLARD AGLLVHEAGY RLAGAGVVNM
FPHTSHVESM AVFERD
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