Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0710 |
Symbol | |
ID | 8018337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 743107 |
End bp | 743511 |
Gene Length | 405 bp |
Protein Length | 134 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644829486 |
Product | putative type-4 frimbrial pilin-related signal peptide protein |
Protein accession | YP_002980683 |
Protein GI | 241662323 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.16724 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.871193 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTATC GCTATGCCGC ATTCACGCTT GTCGAGCTTA CGATCGCATT GGTTATCGCT GCGTTGTTGA CCGGCGCCGC CATACAAACC TGGTCGAGAC ACCATGAGCG CGCGCGGCGG ACTGCGGCGC ATGCGGCGCT GGTCTCAACC ATGGTGGAAT TGGAACGCCA GTATGCGCAC ACAGGCAATA GCTCCTCACC GGCCAACATT CCGGAATACA TCTCCGGCTA TCACTTGCTT GCTGGCCCGT GCGATGGGCG TGCTGCCGCA CATTGCATTG AAGTCGTCGC CCAGCCGGTG CACGCGGGCA CCGACTGCGG CGCGCTTATC CTGCGCAACA CCGGCGAACG GTTCACGCAG ATCGGCAATA CGCGCCAACC GGCATCGCCC GCATGCTGGC CATGA
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Protein sequence | MKYRYAAFTL VELTIALVIA ALLTGAAIQT WSRHHERARR TAAHAALVST MVELERQYAH TGNSSSPANI PEYISGYHLL AGPCDGRAAA HCIEVVAQPV HAGTDCGALI LRNTGERFTQ IGNTRQPASP ACWP
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