| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0302 |
|---|
| Symbol | |
|---|
| ID | 8017926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 310964 |
|---|
| End bp | 313828 |
|---|
| Gene Length | 2865 bp |
|---|
| Protein Length | 954 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644829082 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_002980281 |
|---|
| Protein GI | 241661921 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.988725 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAA TCAAGATTCG TGGGGCCCGT ACCCACAACC TGAAGAACAT CAACCTCGAT
CTGCCGCGCA ATCAGCTGAT CGTGATTACC GGGCTTTCGG GGTCGGGCAA GTCGTCGCTC
GCGTTCGACA CGCTGTATGC GGAGGGGCAA CGGCGCTACG TGGAATCCCT GTCGGCATAT
GCCCGGCAAT TTCTGCAGTT GATGGAAAAA CCCGACGTTG ACCTGATCGA AGGTCTGTCG
CCGGCCATTT CCATCGAGCA GAAGGCCACC AGCCACAACC CGCGCTCGAC GGTCGGTACC
GTCACCGAAA TCCACGATTA CCTGCGTCTG CTGTATGCGC GCGCCGGCAC CCCTTACTGC
CCCGATCACG GCCAGCCGCT CGAAGCGCAA AGCGTGTCGC AAATGGTGGA TGCAGTGCTG
GCGCTGCCGG CCGACACCAA GCTGATGATC CTGGCGCCGG TGGTAGCGAA CCGCAAAGGC
GAGCACGTCG ACCTGTTCGA AGCGATGCAG GCCCAGGGTT TTGTGCGCTT TCGCATCCGC
TCGGGCGGCG GGACCGCGCA CGAGGCTGAA GCCAAGGTCT ACGAAGTCGA CAACCTGCCC
AAGCTGAAGA AGAACGACAA ACATTCGATC GAGGTCGTGG TCGACCGCGT GAAGGTGAAC
CCGGAACTCA AGCAGCGTCT GGCCGAGTCA TTCGAAACCG CGTTGCGGCT GGCAGACGGC
CGCGCGCTCG CGCTGGAAAT GGACACCGGC AAGGAACACG GCTTCAGCTC CAAGTTCGCC
TGTCCGATCT GCTCGTATTC ACTGCAGGAG CTGGAGCCGC GGCTGTTCTC GTTCAACAAC
CCGATGGGCG CCTGCCCGCA CTGCGACGGC CTGGGCCAGA TCACGTTCTT CGATCCGAAG
CGCGTGGTGG CCTTTCCGAA TCTGTCGCTG GCGTCTGGCG CGATCAAGGG GTGGGACCGC
CGCAACCAGT TCTATTTCCA GATGCTGCAA AGCCTGGCGG CGTTCTACGA CGTCGACATC
GATGTCGCGT TTGAAGACCT GCCGGCCGAA ATCCAAGAGA TCGTGCTGCA CGGCTCGGGC
AAGCAGCAGA TACCGTTTAC GTATATCAAC GAGCGCGGCA AGACCACCGT GCGCGAGCAC
GCGTTCGAAG GGATCATCCC CAACCTGGAG CGGCGCTACA AAGAGACCGA CTCCATCGCC
GTGCGCGAGG AGCTGGCCAA GTACCAGAAC AATCAGCCGT GCCCCGAGTG CCACGGCACC
CGCCTGCGCC GCGAGGCCCG CTTCGTCAAG ATCGGCGAAG CCGACCAGGC ACGCGGCATC
TACGAGATCA ACGGCTGGCC GCTGCGCGAT GCGCTCACGT ATTTCCTGAC GCTGAACATG
CACGGCGCCA AGCGCGAGAT TGCCGACAAG ATCGTCAAGG AAATCACCGC GCGGCTGAAC
TTCCTGAACA ACGTCGGGCT CGATTACCTC TCACTGGAAC GCAGCGCCGA TACGCTGTCG
GGCGGCGAGG CGCAGCGCAT CCGCCTGGCG TCGCAGATCG GCTCGGGGCT GACCGGCGTG
ATGTACGTGC TGGACGAGCC GTCCATCGGC CTGCACCAGC GCGACAACGA TCGGCTGATC
GGTACGCTCA AGCACCTGCG CGATCTCGGC AATTCGGTGC TGGTGGTGGA GCACGACGAA
GACATGATCC GCGCGTCGGA CTACGTGGTC GACATCGGCC CCGGTGCCGG CGTGCATGGC
GGCCAGATCA TCGCTGAGGG CACGCCCCAG CAGGTCGAGC AATCGCCGGC GTCGCTGACG
GGCGATTATC TGTCGGGCAA GCGCCGCATC GAAGTGCCCA AGCAGCGCAC GGCCCCCGAT
GAAGAGCGCT GGCTGCGCAT TATCAACGCC AGCGGCAACA ACCTGAAGAA CGTGTCGGCA
GATATTCCGA TCGGGTTGCT GACGTGCATC ACGGGCGTGT CGGGTTCGGG CAAGTCGACG
CTGATCAACG ACACGCTGTA CCACGCGGTG GCGCGCCATC TGTATGGCTC GACGCCGGAG
CCCGCAGCGC ACGATCGCAT CGACGGCCTG GAGCATTTCG ACAAGGTCAT CAACGTCGAC
CAGTCGCCGA TTGGCCGCAC GCCGCGCTCG AACCCGGCCA CCTACACGGG CCTGTTCACG
CCGATCCGCG AGCTGTTTGC CGGCGTGCCG TCCGCCAAGG AGCGCGGGTA CGACCCCGGC
CGCTTCTCGT TCAACGTCAA GGGCGGCCGC TGCGAGGCCT GCCAGGGCGA CGGTGTGCTG
AAGGTCGAGA TGCACTTCCT GCCAGACGTG TACGTGCCCT GCGACGTGTG CCACGGTAAG
CGCTATAACC GCGAAACGCT CGAAGTGCTC TACAAGGGCA AGAACATCAC CGAAGTGCTG
GAGATGACGG TGGAGCAGGC GCACGAGTTC TTCGCGCCGG TGCCGGTCGT GCGCCGTAAG
CTGCAGACAC TGCTGGATGT GGGCCTGGGC TACATCCGCC TGGGGCAATC GGCGACCACG
CTATCCGGTG GCGAGGCGCA GCGGGTGAAG CTGTCGCTGG AGCTATCGAA GCGCGACACA
GGCCGCACGC TGTACATCCT GGACGAACCG ACGACCGGCC TGCACTTCCA CGACATCGAG
CTGCTGCTGA AGGTCATCTA CAAGCTGCGT GATCACGGCA ATACGATCGT GATCATCGAG
CACAACCTCG ACGTGATCAA AACGGCGGAC TGGCTGCTCG ACCTGGGCCC CGAAGGCGGC
GCGGGCGGTG GGCAGATCAT CGCCAAAGGC ACGCCCGAGG ATGTGGCCAA GAGCAAGGCG
AGCTTTACCG GCAAGTACCT CGCGCCGCTG CTCAAGCGCA GATAA
|
|---|
| Protein sequence | MDEIKIRGAR THNLKNINLD LPRNQLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLQLMEK PDVDLIEGLS PAISIEQKAT SHNPRSTVGT VTEIHDYLRL LYARAGTPYC
PDHGQPLEAQ SVSQMVDAVL ALPADTKLMI LAPVVANRKG EHVDLFEAMQ AQGFVRFRIR
SGGGTAHEAE AKVYEVDNLP KLKKNDKHSI EVVVDRVKVN PELKQRLAES FETALRLADG
RALALEMDTG KEHGFSSKFA CPICSYSLQE LEPRLFSFNN PMGACPHCDG LGQITFFDPK
RVVAFPNLSL ASGAIKGWDR RNQFYFQMLQ SLAAFYDVDI DVAFEDLPAE IQEIVLHGSG
KQQIPFTYIN ERGKTTVREH AFEGIIPNLE RRYKETDSIA VREELAKYQN NQPCPECHGT
RLRREARFVK IGEADQARGI YEINGWPLRD ALTYFLTLNM HGAKREIADK IVKEITARLN
FLNNVGLDYL SLERSADTLS GGEAQRIRLA SQIGSGLTGV MYVLDEPSIG LHQRDNDRLI
GTLKHLRDLG NSVLVVEHDE DMIRASDYVV DIGPGAGVHG GQIIAEGTPQ QVEQSPASLT
GDYLSGKRRI EVPKQRTAPD EERWLRIINA SGNNLKNVSA DIPIGLLTCI TGVSGSGKST
LINDTLYHAV ARHLYGSTPE PAAHDRIDGL EHFDKVINVD QSPIGRTPRS NPATYTGLFT
PIRELFAGVP SAKERGYDPG RFSFNVKGGR CEACQGDGVL KVEMHFLPDV YVPCDVCHGK
RYNRETLEVL YKGKNITEVL EMTVEQAHEF FAPVPVVRRK LQTLLDVGLG YIRLGQSATT
LSGGEAQRVK LSLELSKRDT GRTLYILDEP TTGLHFHDIE LLLKVIYKLR DHGNTIVIIE
HNLDVIKTAD WLLDLGPEGG AGGGQIIAKG TPEDVAKSKA SFTGKYLAPL LKRR
|
|---|
| |