Gene Rpic12D_0257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0257 
Symbol 
ID8017880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp268970 
End bp269821 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content64% 
IMG OID644829036 
Productnitrate ABC transporter, inner membrane subunit 
Protein accessionYP_002980236 
Protein GI241661876 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 
TIGRFAM ID[TIGR01183] nitrate ABC transporter, permease protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.738144 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACGC TCGTCAAGAC GTTGTCTGGC GTGCAGTCCG ACGCCGCCCC TGAGCATCGC 
CGGTTCGTTG CACGCGACTG GTTTGTCGCT GCCGTGGTGC GCGGCTTTCC GCCCGTTCTG
GGCTTGGTGC TGTTCGTGCT GGCGTGGCAG GGCATTGCCA CGGCCATCCC CGCATTGCCG
ACACCGGCAG TGACGTGGAA AGCAGCAGTC GCCTTGTTCG CCGATCCGTT CTATCGCAAT
GGCCCGAATG ACCAGGGTGT GGGCTGGAAC GTGCTCGCTT CGCTGGCGCG CGTGGGTGCG
GGCTTCGGCA TGGCTGCAGT CATCGGCATT CCGGCGGGCT TCCTGATCGG GCGTTTTGCG
TTTCTCAACG CGATGGCCTC GCCCATCATC AGCCTGCTGC GGCCCGTGTC GCCGCTGGCG
TGGCTGCCGA TCGGGCTGCT GCTGTTCAAA TCGGCCAACC CGGCGGCCAT CTGGGCGATC
TTCATCTGCT CGATCTGGCC GATGGTCATC AACACCGCCG TGGGCGTGAC GCGCGTGCCG
CAGGACTACC TGAACGTGGC CCGTGTGCTG AATCTCTCCG AATGGAAGGT GTTCACGCGC
GTGCTGTTTC CCGCCGTGCT GCCGTACATG CTGACGGGTG TGCGATTGTC CATCGGCACG
GCATGGCTGG TGATCGTAGC GGCGGAGATG CTCACGGGCG GCGTCGGCAT CGGCTTCTGG
CTGTGGGACG AGTGGAACAA CCTGAAGGTC GAGCACATCG TCATCGCCAT CTTCGTGATT
GGTGTGGTGG GCTTGCTGCT CGAGCACGCG CTGCTGGCGA TTGCGCGGCG CTTCTCGTAC
GACGCGGTTT GA
 
Protein sequence
MNTLVKTLSG VQSDAAPEHR RFVARDWFVA AVVRGFPPVL GLVLFVLAWQ GIATAIPALP 
TPAVTWKAAV ALFADPFYRN GPNDQGVGWN VLASLARVGA GFGMAAVIGI PAGFLIGRFA
FLNAMASPII SLLRPVSPLA WLPIGLLLFK SANPAAIWAI FICSIWPMVI NTAVGVTRVP
QDYLNVARVL NLSEWKVFTR VLFPAVLPYM LTGVRLSIGT AWLVIVAAEM LTGGVGIGFW
LWDEWNNLKV EHIVIAIFVI GVVGLLLEHA LLAIARRFSY DAV