| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0250 |
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| Symbol | |
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| ID | 8017873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 259246 |
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| End bp | 262164 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644829030 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002980230 |
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| Protein GI | 241661870 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.641006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.187635 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCCTC GCCGGCCGCT TGTCGCCATT GCCGGCGGCA TCGGCTTCCT CCTCGTCCTT
GTTGGGCTGA CCGTGATGGT CGGCTGGCTG CGGCATTGGC CGTGGGCAGT GAAGCTCGGC
AGCGATCGGC TGCTGATCGT GTTCGCCACC GGCGTCAACC TGACCCTGCT TGGCGCGGGG
CTGGCTGCGC TGCTGGTCGG GACGGTACGG CCGAATGTGC GCTGGGCAGA TCCGGTGGCC
CGGGGGCTGG GCGGCGTGGT GGCGGTGCTG TCCACGCTGC GGCTGGCCGA GATGCTCACG
GGATGGCCGA TCGGGCTGGA CTTTCCGGGC GTGCACACAT GGCTGGACCG CCAATGGGTG
ACCGGTTGGA TCGGCGGCAT GCACCCCAGC CACGCGCTGG CGATGGCCGC ATCGGCGACG
GCCCTGAGCC TTGTGCCGAC GTTGCGCAAA CCGCACCGCG CGCGGTGGTT CTGGGGCTTG
GTCGGCCTGG CGATGCTGCT CTGCGCGGGC GACCTGCTTG GCCGCGCCAT GGCGCTCGAA
TATCTGTACC CGGCGTGGTT GGTGTGGCGC GCCTCGGACG TAGCGGCCAT CTGCACGCTG
CTGGTGGTCA TGGGCGTGCT GTGCGTTGCG GTAGTCCGGC AGCCGGGCGT GTTGCGCCTA
CGCTTGTCGC CGGAAGACAC CATCGTGTGG ATCAGCGGCG GCTGCGTGGT ACTTGCAGGC
CTGGGAGCGA CCATCACGGC GTTCATCATC CAGGTGGACA GCGTCGGCCT GACATTCGGC
ACCGCGCGGG CGCGGGCGCT CTCCAGCTAC GCAGAAGAGT TCGATCAACT GCTGGCCATG
CGCGCGGAAA ACCCGCGCCT GGTGGCCGCC GCCACGCACA TCCAGGAAGT GCTGCGCCAT
CCCACCGACA ATGCGGCGCG CCTGCGCAGC GAGAGCGCGC TGCAGGCGTA TCGCCAGCAA
GGGTACTCGT ACCTGCAACT GCGTACGCTG GCGGGAGAGG GCATCGTCAG TCTCGGCACG
CAAACGCTTG AGCCCGAGCT GTCGATTCGG CTGCACGCCG GCCTCGCGCC CGAGCGCGTC
ACGCTGCAAT GGGTACACGG ATTTGCCATG CGCACAGAAA CGCCTGTCAT GGCAGACGGC
ATGCAGATCG GCTTGCTGGT CGCAGAGCAA CCGCTCGCCC ACATGACCGC GCGCTACGCC
AACGAGCGCG GCATCGGAAA GACCGAAACG CTGGCGATGT CGGGCTTTGA TGTGCGCGGC
CGCGCCATGT CGTTTCCGCA GCGCTTCGAT GCGTACGTGT TCGAGTTGCC GGCTCTTACG
GTCGACCGCC GGCCGCTGCC GTCGCGCCTG GCGCTATCGG GCGAGGCAGG CTACGGCCAG
TGGCAGGACA TCCACGGCAT GCCGACATCG TTCAGCTACA CGCCCATCGG CCACACGGGC
CTGGCGCTGA TCAGCAAGAT CGCGAGCGCC GAGCTGTACG CCCCGATGCG CGTGCAGTTC
GAGCGGCTCG GCGCCTTCAT GCTGTGCCTG ATGATCGCCA GCGTGCTGGT CATCCGTCTG
ACGGTGCGGC CGTTTGCCAA CCGGCTGGCC GCGTCCGAAC GCGCGCTGCG CACCGCAAAC
GAAAGCCTGG AACGCCGCCG TGATGCCCTG CGCGCGAGCC GCGAACAACT GCGCCTAGTG
GCCGACAACG TGCCCGCGCA GCTCAGCTAC GTCGACTCCG ACGGCATCGT CCGCTTTGCC
AGCCGCACCC TGCTCGAAGC CTTCGGCCGC CGCGAGGACG AGATGCTCGA TCACCACGTG
CGCGACATCT ACGCCCCCGA GGACTATCGC ACGCTGCTGC CTTACATGAC CGAGGTGCTG
GCCGGGTACC CGGTGCAATT CGAGATCCAG TCGATGCGCA CCGGCGTGCC CCGCTACCTG
AGCGGTCATT ACTTTCCTGA CTACGACGAT CGCGGCACGC TGCGGGGCTA TTTCTCCGTG
CTGCAGGATC TGACGGCCCG CACCACTGCC GAGCTGGCTC TGGCGCGCAG TGAACGGGCG
CTCAAGCTGG TGCTCGACAA CGCGCCGCTG CTGGTCTCGC ACATCAACCC GGATGGCGTC
TTCACGTTCT GCAACGTCAC GCACGCACGT TGGCTGCAGC GCACTCCGGA GGAAGTCTGT
GGCCAGACGC CGGAACGGGT CTTCACGCCG AGCACGTACG CGCTGATCGC ACCGTATCTC
GCGCGCGCCC AGCGAGGAGA ATCGGTCCAA TTCGAGATCA CCGCGCCGTG GTACGAAAGA
CCGTCTGCCA GCGGTCTGCG CAGCCGCACA CGACACCTCC GGGGCCAACT CGTCCCCGAT
GCCGGAGAAG CGCAGGACGG CCGCTGCGGT TTCTACGCCT TCGTGCAGGA CGTGACCGAA
GCCAAGCGCA GCGAGATGGA GCTTTCCCGC ATGGCGCGCT TTGATGCGCT GACGGGCCTG
CCTAACCGTT ATGAGCTGTA CGAGCGGCTG CGCGCAGCGC TGGAGCGCCG TCAGCGGCTG
CCTGCGCCGT TGGGGGTGCT GTACCTGGAC GTCGACCACT TCAAGCACAT CAACGACACC
TACGGCCACG CCGCCGGCGA TGCAGTGCTG GTGGAAGTCG CGCACCGGCT TCAACGCGCC
GTGCGCCGCA GCGACACCGT CGCCCGCCTC GCAGGTGACG AATTCATCAT CTTGCTGGAC
CCCATCGACG CCCCGGATGA TGCGCTGCAC ACCGCTCAGA AAATCGTCGG TGCAATCCGC
CCGCCCATCA CCCTGCGGGG CGACACGATC CTGCACGTCA CCACGAGCGT CGGTGTTGCC
TGTCCCGGCC CCGAAGTACG TGAACCCGAC ACCGCTCTAC GGGAAGCGGA TCGCGCACTT
TACTGGGCCA AGTCTCGCGG TCGAAACACG GCGGCGTAG
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| Protein sequence | MVPRRPLVAI AGGIGFLLVL VGLTVMVGWL RHWPWAVKLG SDRLLIVFAT GVNLTLLGAG
LAALLVGTVR PNVRWADPVA RGLGGVVAVL STLRLAEMLT GWPIGLDFPG VHTWLDRQWV
TGWIGGMHPS HALAMAASAT ALSLVPTLRK PHRARWFWGL VGLAMLLCAG DLLGRAMALE
YLYPAWLVWR ASDVAAICTL LVVMGVLCVA VVRQPGVLRL RLSPEDTIVW ISGGCVVLAG
LGATITAFII QVDSVGLTFG TARARALSSY AEEFDQLLAM RAENPRLVAA ATHIQEVLRH
PTDNAARLRS ESALQAYRQQ GYSYLQLRTL AGEGIVSLGT QTLEPELSIR LHAGLAPERV
TLQWVHGFAM RTETPVMADG MQIGLLVAEQ PLAHMTARYA NERGIGKTET LAMSGFDVRG
RAMSFPQRFD AYVFELPALT VDRRPLPSRL ALSGEAGYGQ WQDIHGMPTS FSYTPIGHTG
LALISKIASA ELYAPMRVQF ERLGAFMLCL MIASVLVIRL TVRPFANRLA ASERALRTAN
ESLERRRDAL RASREQLRLV ADNVPAQLSY VDSDGIVRFA SRTLLEAFGR REDEMLDHHV
RDIYAPEDYR TLLPYMTEVL AGYPVQFEIQ SMRTGVPRYL SGHYFPDYDD RGTLRGYFSV
LQDLTARTTA ELALARSERA LKLVLDNAPL LVSHINPDGV FTFCNVTHAR WLQRTPEEVC
GQTPERVFTP STYALIAPYL ARAQRGESVQ FEITAPWYER PSASGLRSRT RHLRGQLVPD
AGEAQDGRCG FYAFVQDVTE AKRSEMELSR MARFDALTGL PNRYELYERL RAALERRQRL
PAPLGVLYLD VDHFKHINDT YGHAAGDAVL VEVAHRLQRA VRRSDTVARL AGDEFIILLD
PIDAPDDALH TAQKIVGAIR PPITLRGDTI LHVTTSVGVA CPGPEVREPD TALREADRAL
YWAKSRGRNT AA
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