| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0155 |
|---|
| Symbol | |
|---|
| ID | 8017778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 162631 |
|---|
| End bp | 165348 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644828937 |
|---|
| Product | methionine synthase |
|---|
| Protein accession | YP_002980137 |
|---|
| Protein GI | 241661777 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC ACCCCATGCG CCTCTCTGGC CTCGAACCGT TCAACATCGG CGAGAGCACC
CTGTTCGTCA ACGTCGGCGA GCGCACCAAT GTCACCGGGT CCAAGGCGTT TGCGCGCATG
ATCCTGAACA GCCAGTTCGA CGAGGCGCTG GCCGTGGCGC GCCAACAGGT CGAAAACGGC
GCACAGGTCA TCGATATCAA CATGGACGAG GCGATGCTCG ATTCGAAAGC GGCGATGGTG
CGCTTCCTGA ATCTGATCGC CTCGGAACCC GATATCGCGC GGGTGCCGAT CATGATCGAC
TCGTCCAAGT GGGAGGTGAT CGAGGCAGGC CTGAAGTGCG TGCAGGGCAA GGCGATTGTG
AATTCGATCT CGCTCAAGGA AGGCGAAGAA CAGTTCGCGC ACCACGCGAA GCTCATCAAG
CGCTACGGCG CGGCCGCCGT GGTGATGGCG TTTGACGAGC AAGGCCAGGC CGACACGTTC
GCCCGCAAGA CCGAGATCTG CAAGCGCAGC TACGACTTCC TGGTCAACAA GGTCGGCTTC
GCGCCGGAAG ACATCATCTT CGACCCGAAC ATCTTTGCGG TCGCCACCGG GATCGAAGAA
CACAACAACT ATGCCGTGGA CTTCATCGAA GCCACGCGCT GGATCAAGCA GAACCTGCCG
TACGCGAAGG TGAGCGGTGG CGTGTCGAAC GTGTCGTTCT CGTTCCGCGG CAACGACGTG
GTGCGCGAGG CGATCCACAC CGTGTTCCTG TACTACGCGA TTCAGGCCGG CATGGACATG
GGCATCGTCA ACGCCGGGCA GCTCGGGGTG TACGAGAACC TCGACCCCGA GCTGCGCGAG
CGCGTGGAAG ACGTGGTGCT CAACCGCCGC CCCGACGCCA CCGACCGCCT GCTGGAAATT
GCAGACCGCT ACAAGGGCGG CGGCACAAGG CGCGAAGAAA ATCTCGCCTG GCGCCAGGAG
CCCGTGGAAA AGCGGCTGGC CCACGCGCTC GTGCACGGCA TCACCGACTA CGTGGTCGAA
GACACTGAAG AAGTCCGGCA GAAGATCTTT GCCGCCGGCG GCCGTCCGAT CCAGGTGATC
GAAGGCCCGC TGATGGACGG CATGAATATC GTGGGCGATC TCTTCGGTGC CGGGAAGATG
TTCCTGCCGC AGGTGGTGAA ATCCGCCCGC GTGATGAAGC AGGCGGTGGC GCACCTGATT
CCTTTCATCG AAGAAGAAAA GCGCCAGATT GCAGCGGCCG GCGGCGACGT CCGCTCGCGC
GGCAAGATCG TCATCGCCAC CGTCAAGGGC GACGTGCACG ACATCGGCAA GAACATCGTC
ACCGTCGTGC TCCAGTGCAA CAACTTCGAA GTCGTGAACA TGGGTGTGAT GGTCCCGTGC
AACGACATCC TGGCCAAGGC CAAGGTGGAA GGCGCGGACA TCATTGGCCT GTCGGGCCTG
ATCACGCCGT CGCTTGAAGA GATGGCCTAC GTGGCGTCGG AGATGCAGCG AGACGAATAC
TTCCGCGTGA AGAAAATCCC GCTGCTGATC GGCGGCGCGA CGACGAGCCG CGTGCATACC
GCCGTGAAGA TCGCCCCGAA TTACGAAGGC CCCGTGGTGT ACGTGCCGGA CGCCTCGCGT
TCGGTAAGCG TGGCGTCAAG CCTGCTGTCG GACGAAGGCG CCGCACGTTA CGTGGAAGAA
CTGCACGCAG ACTACGACCG CATCCGCACC CAGCACGCCA ACAAGAAGGC CACGCCGATG
GTGTCGCTGG CAGCCGCGCG CGCCAACAAG ACCAAGATCG ACTGGAGCAA CTACACGCCG
CCCAAGCCGA AGTTCATCGG CCGCCGCGTG TTCCGCAACT ACGACCTGAA CGAACTCGCG
CAGTACATCG ACTGGGGCCC GTTCTTCCAG ACGTGGGACC TCGCCGGCAA ATTTCCGGAC
ATCCTCAACG ACGAGATCGT CGGCGAATCG GCCCGCAAGG TGTTCTCGGA CGGCAAGAGC
ATGCTGGCGC GCCTGATCGC CGGGCGCTGG CTGACGGCCA ACGGCGTGAT CGCGCTGCTG
CCGGCCAATA CCGTCAACGA CGACGACATC GAGATCTACA CCGACGAATC GCGCTCGGAA
GTCGCGCTCA CCTGGCGCAA CATCCGCCAG CAGAGCGAGC GCCCGATCAT CGATGGCGTG
ATGCGCCCGA ACCGCTGCCT GGCCGATTTC ATCGCGCCCA AGAGCACCGG CATTGCCGAC
TACATCGGCC TGTTTGCCGT GACGGGCGGC ATCGGGGTGG AAAAGCGGGA GAAGCAGTTC
GAAGCCGACA ACGACGACTA CAGCGCAATC ATGCTCAAAG CCCTGGCCGA CCGCTTTGCC
GAAGCCTTTG CCGAGTGCCT GCACGCCCGC GTGCGTCGCG ACTTGTGGGG CTACGCACCC
GATGAAACGC TGGACAACGA TGCGCTCATC CGGGAAGAGT ACAAGGGCAT CCGCCCCGCG
CCGGGCTACC CGGCCTGCCC GGAACACACC GTCAAGCGCG ACATGTTCCG CGTGCTCGAC
GCGCAGGAGA TCGGTATGGA CCTGACCGAA GCGCTGGCGA TGACGCCCGC GGCGTCCGTC
TCGGGCTTTT TCATGTCACA TCCGGACAGC ACCTACTTCA CGCTCGGCAA GATCGGCCAG
GATCAGGTGG ACGACATGAT CGCTCGCAGC GGCGAAGACC GCGCCTTTGT GGAGCGCGCC
CTCGCCCCGA ATCTCTGA
|
|---|
| Protein sequence | MTDHPMRLSG LEPFNIGEST LFVNVGERTN VTGSKAFARM ILNSQFDEAL AVARQQVENG
AQVIDINMDE AMLDSKAAMV RFLNLIASEP DIARVPIMID SSKWEVIEAG LKCVQGKAIV
NSISLKEGEE QFAHHAKLIK RYGAAAVVMA FDEQGQADTF ARKTEICKRS YDFLVNKVGF
APEDIIFDPN IFAVATGIEE HNNYAVDFIE ATRWIKQNLP YAKVSGGVSN VSFSFRGNDV
VREAIHTVFL YYAIQAGMDM GIVNAGQLGV YENLDPELRE RVEDVVLNRR PDATDRLLEI
ADRYKGGGTR REENLAWRQE PVEKRLAHAL VHGITDYVVE DTEEVRQKIF AAGGRPIQVI
EGPLMDGMNI VGDLFGAGKM FLPQVVKSAR VMKQAVAHLI PFIEEEKRQI AAAGGDVRSR
GKIVIATVKG DVHDIGKNIV TVVLQCNNFE VVNMGVMVPC NDILAKAKVE GADIIGLSGL
ITPSLEEMAY VASEMQRDEY FRVKKIPLLI GGATTSRVHT AVKIAPNYEG PVVYVPDASR
SVSVASSLLS DEGAARYVEE LHADYDRIRT QHANKKATPM VSLAAARANK TKIDWSNYTP
PKPKFIGRRV FRNYDLNELA QYIDWGPFFQ TWDLAGKFPD ILNDEIVGES ARKVFSDGKS
MLARLIAGRW LTANGVIALL PANTVNDDDI EIYTDESRSE VALTWRNIRQ QSERPIIDGV
MRPNRCLADF IAPKSTGIAD YIGLFAVTGG IGVEKREKQF EADNDDYSAI MLKALADRFA
EAFAECLHAR VRRDLWGYAP DETLDNDALI REEYKGIRPA PGYPACPEHT VKRDMFRVLD
AQEIGMDLTE ALAMTPAASV SGFFMSHPDS TYFTLGKIGQ DQVDDMIARS GEDRAFVERA
LAPNL
|
|---|
| |