Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0046 |
Symbol | |
ID | 8017669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 50826 |
End bp | 51644 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644828830 |
Product | short chain dehydrogenase |
Protein accession | YP_002980030 |
Protein GI | 241661670 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCAGA CGCCCAACCA GTCAACTGCG GAATCGACCG CAGAATCCGC CACCCAGCGG CGCATCGCCC TCGTCACGGG CGCAGGCCGC CGCGTGGGGC GCGTCATTGC CCTGGCCCTG GCCCGGCACG GCTGGGATGT GGCCGTGCAT TGCCACCGCT CGCGCACCGA GGCCGATGCC GTGGCCGCCG AGATCACCGC CATGGGCCGC CGCGCCGTCG TGCTGCAGGC CGACTTGTCG GACGAAGCCG CCGCCGGTCG CCTGATTGCC GATTGCAGCG CTGCACTGGG TACGCCTACG TGCCTGGTCA ACAACGCGTC GCTGTTCCAG TACGACGTGG CGACCAGCTT CAGCTATGCG TCGCTCGATA CGCACATGCG CACCAACGTG GCGGCGCCGC TGCTGCTGTC GCGCGAGCTG CACCGTGCGC TGACTGCCGA TGGCGCCGAG CACCGCGGCG TCGTCATCAA TCTGCTCGAC CAGAAGCTCG ATAACCTGAA CCCGGATTTC CTCTCTTACA CGTTGTCGAA GGCGGCGCTG TCGACCGCCA CGATGCAGCT TGCGCAGGCG CTGGCGCCCG CGCTGCGCGT GGTGGGCGTG GCGCCGGGCA TCACGATGGT GTCGGGCGAC CAGTCGCAAG GCGGGTTTGC ACGCGCGCAC CAGATGACGC CGCTGGGCCA GTCGTCCACG CCGGAAGACA TCGCCGAGGC GGTGTGCTAC CTCGCCACCG CCCGCGCCGT CACCGGCACC ACACTGTTCG TCGACGGAGG CCAGCACCTG ATGCCGCTGG CTCGCGACGT GATGTTCCTG ACTGAATAA
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Protein sequence | MAQTPNQSTA ESTAESATQR RIALVTGAGR RVGRVIALAL ARHGWDVAVH CHRSRTEADA VAAEITAMGR RAVVLQADLS DEAAAGRLIA DCSAALGTPT CLVNNASLFQ YDVATSFSYA SLDTHMRTNV AAPLLLSREL HRALTADGAE HRGVVINLLD QKLDNLNPDF LSYTLSKAAL STATMQLAQA LAPALRVVGV APGITMVSGD QSQGGFARAH QMTPLGQSST PEDIAEAVCY LATARAVTGT TLFVDGGQHL MPLARDVMFL TE
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