| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5193 |
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| Symbol | |
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| ID | 6412893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5594715 |
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| End bp | 5596463 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642715083 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_001994156 |
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| Protein GI | 192293551 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5616] Predicted integral membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.117733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCGG CAAACTCGGA GCGATATGCG CTTCGGCTGC TTGGGCCCTT CGAGCTTACG
GCGCCCGGCG GGCGCCGGGT CGAGATTACC AGCAAGAAGG GCATCGCCGT CGTCGCGATG
CTCGCGTTGT CGCGCGACGG TGCGCGCAGC CGCGGTTGGC TGCAGGATCG ACTCTGGGGC
AGTCGGCGCA AGGCGGAAGC CGCCGGCAGC CTTCGCCGCG AGCTGTCGAA CCTGCGCAAG
GTGCTGAACG CGGACGGCGC CGAACTGCTG CTCAGCGATC GCGATCGCGT ACGTCTCCGT
ACAGATCTGA TCGACATTGA TCTGTTCGTG GCGCGCTCCG GCCGCGCAAA CGGCGAATTC
CTCGAAGGAC TTGATATTTC GAGTGAGCGC GGCTTCGGCG AATGGCTGCG GGAGCAGCGC
GATGCGCTGG TGCCGCCGGC CCAAGACGTT GTGGTCTCGG CGGTGACGGG CGGCGCCGGT
ACGCTGCCGA CTCACATCGT CGACATCTCG ACCCCGCCGG TGGGCTTCGC CGGCCGTCCC
GCGATCGCGG TATTGCCGTT CGCCAACGCC ACCGGCGACG AGACGCTGGA CTATGTGGCC
GAAGGCATTG GCGAGGAGCT GATCGTCGGG CTGTCGCGCA TCCGCTGGCT GCCGGTGATC
TCCCGCAACT CGAGCTTCTC GTTCACCGAG AGCGACGATC GCAAGCTGAT CGGCCAGCGG
CTGGGCGCGC AGTACCTCGT CGAGGGCCGG CTGTATCGCG CCTACGACTC CTATGGGGTG
TCGGCCTCAT TGGCCGAGGC GATCACCGGC TATTCGCTGT GGTCGCGGCG GTTCACGCTG
CAATCCCCGG CGGCGCATGA CGAGCTCGTG CAGTTCGTCA ACGAACTGGT GGCGCAGCTC
GAAAGCCGGA TCGAGCATGC CGAGCAGATC CGTATCCGCG GCAAGCGCCA GGACAAGCTC
GGCGTTTGCG ATCTGATCTG GCGCGGCCGC TGGCATCTCA ACCGGCTGAC GCGCGCGGAT
TCCGAGATGG CGCAGAAGCT GTTCGCTGAG GCCCTGGCGC TTGATCCGGA CTCGCCCGAA
GCCTTGATCC AGGCAACGGC GGCGCTGGCG TGGTCGATCT GGGCCGGCCG CCAGCCGCAG
GATCAGATCC AGCGGATGCG CAAGCTGTCG CAACAGGCGA TGCTGGCAGA TCCCGATGAC
GGTCGCGGCT TCATGCTCGC CGGCATCGCC GAGATGTGGC TGCGCCATCC GCTCGAGGCG
AAGAACCTGC TCAGGCAGGC GATCACGCTC ACCCCGAGCC TGGCGCTGGC GCACGCTCAG
CTCGGCGGCT GCTTCAACCT CGCCGGCGAG CCCGATCGGG CGATCGTTCA GCTCAAGACC
GCGATGCGGC TGTCGTCGAA CGATCCCAAC ATCTTCTATT CGTTGGGCGA GCTGGCGCTC
GCCTATACCA TGCTGGGGCA ATGGCCGGAG GCGATCGAGC ACGCTACGCT GGCGCTGGCG
CGGCGCCCTG CGTATTGGTA CGCGCATGTT CTGAAGATCA ACGCGCTGGC GCGGATCGGA
CAGCTTGACG CGGCACGGAT CGCCTGCGAC GAGCTACTCG CCATCAAGCC GAACTTCTCC
AAACGATTTC TGGATTGGCT GCCGTTCGTC GATCGCACCT GGGTCGATCA CTTCGTCCAG
GGGCTCAAGA TGGTGCCGGG ACGGCCGTCA GATTGGCCGG AGCGGGAAAC CCACGAAACC
GCTGCGTAG
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| Protein sequence | MTAANSERYA LRLLGPFELT APGGRRVEIT SKKGIAVVAM LALSRDGARS RGWLQDRLWG
SRRKAEAAGS LRRELSNLRK VLNADGAELL LSDRDRVRLR TDLIDIDLFV ARSGRANGEF
LEGLDISSER GFGEWLREQR DALVPPAQDV VVSAVTGGAG TLPTHIVDIS TPPVGFAGRP
AIAVLPFANA TGDETLDYVA EGIGEELIVG LSRIRWLPVI SRNSSFSFTE SDDRKLIGQR
LGAQYLVEGR LYRAYDSYGV SASLAEAITG YSLWSRRFTL QSPAAHDELV QFVNELVAQL
ESRIEHAEQI RIRGKRQDKL GVCDLIWRGR WHLNRLTRAD SEMAQKLFAE ALALDPDSPE
ALIQATAALA WSIWAGRQPQ DQIQRMRKLS QQAMLADPDD GRGFMLAGIA EMWLRHPLEA
KNLLRQAITL TPSLALAHAQ LGGCFNLAGE PDRAIVQLKT AMRLSSNDPN IFYSLGELAL
AYTMLGQWPE AIEHATLALA RRPAYWYAHV LKINALARIG QLDAARIACD ELLAIKPNFS
KRFLDWLPFV DRTWVDHFVQ GLKMVPGRPS DWPERETHET AA
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