| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5005 |
|---|
| Symbol | |
|---|
| ID | 6412697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5389047 |
|---|
| End bp | 5390051 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642714888 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_001993969 |
|---|
| Protein GI | 192293364 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.6624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGG AAGATCTTTA TCGGCTGCTG CGTACCAGCC ACGTTCAGGC GCAAGGTATC
GTCGACACGG TCGTCGATCC GATGCTGGTA CTGGACGCCA GCCTGACCGT GCAGAATGCC
AGCCGGTCGT TTTTCGAAAC CTTCAAGGTC GATCGTTACG AGACCATCGG TCAGCCGCTG
TTCGAACTCG GCAACGGTCA GTGGGACATC CCCGACCTGC GACGGCTGCT GCTCGAGGTC
ATTCCCAAGG CGGCGGCGGT GATCAACTAC CAGGTTGATC ACGTTTTCCC GGGCCTGGGG
CCGCGGACGA TGCTGCTGAC GGCGCGCACC CTGGTCCATC CCGACAACGC CAGCCACTCG
ATGCTGCTGT CGATCGTCGA TGCCACCGAC CGGTTTCGGC GCGACGCCGC CAGGGATCTG
CTGCTCGGCG AGATGCGGCA CCGGATGAAA AATCTGTTCG GCGTGGTGCA ATCGCTGGCG
CGGCAGACCA CGACGGAAGG GCGGACAGCG GAGCAATACA GGGACGACTT TCTCGGCCGC
TTCGGCGCTC TGATGGAGGC CGAAGACCTG GCGTTCGTCA CTCAGGATGA GACCGCGCTG
CTCAAATTGC TGCAGCGGAT CCTGGCGCCC TACAAAGGCG GCCCGGCAGC AATCGCGATC
GAGTCGGGGC CCGCAGTGGT TCTAGCCCCC CGTTCGCTTG GGTCGCTCAG CCTGATCTTG
CATGAACTCG CAACCAACGC CGCGAAATAC GGCGCCCTGT CCGCGCCTGG TGGGCGGCTG
CGGGCGACCT GGGCGGTCGA CGCGGCCGGG CGTGAACTGC GGCTGACTTG GGTCGAAAGC
GGCGGCCCCG CGGTCACGCC GCCGACCAGC ACCGGCTACG GCACGGAGCT GATCCGCTCA
GTGACCAGCT ACAGCCTCGG TGGACGTTCG GAACTCGATT ACGCCGTCGG GGGTTTACGG
GCTGAGATCA TCATCCCGCT GAGGAGTGAA GCGCTCCCGA GTTGA
|
|---|
| Protein sequence | MNMEDLYRLL RTSHVQAQGI VDTVVDPMLV LDASLTVQNA SRSFFETFKV DRYETIGQPL
FELGNGQWDI PDLRRLLLEV IPKAAAVINY QVDHVFPGLG PRTMLLTART LVHPDNASHS
MLLSIVDATD RFRRDAARDL LLGEMRHRMK NLFGVVQSLA RQTTTEGRTA EQYRDDFLGR
FGALMEAEDL AFVTQDETAL LKLLQRILAP YKGGPAAIAI ESGPAVVLAP RSLGSLSLIL
HELATNAAKY GALSAPGGRL RATWAVDAAG RELRLTWVES GGPAVTPPTS TGYGTELIRS
VTSYSLGGRS ELDYAVGGLR AEIIIPLRSE ALPS
|
|---|
| |