| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4973 |
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| Symbol | |
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| ID | 6412665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5352526 |
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| End bp | 5353632 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642714856 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_001993937 |
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| Protein GI | 192293332 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.334759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCCGCC TTTCGACAAT TCCGACTTTG CTGATGGCCG CGATGCTGGC GTGCGCGACT
GCGCATGCCG GCGACGAACT GTCGATTTCC AAGCAGCAGG CCGAGCGTGT CGGGATCGAG
ACCTCGCCGC TGGAGAAGCA GCCGGCCGCG ACCGGTCTCA GCTTCCCCGG CAAGATCGCG
GTGCCGCCGG ATCGCAGCCG GCTGATGAAC GCGCCGCTCG GCGGCCGGAT CGAGCGGCTG
TTGGTGCGCA CTGATTCAGT CGTGAAGGCC GGCGATCTTC TGGCCGAGAT CCAGAGTCCG
GCGCTCGCCA ATGCCCAGGC CGAATATCTC GTCGCCTACA ACAAGGAGCG GCTGCTCAAG
ACCAATCTCG ACCGCGAGGA GCAGCTTGCG CCCTATGGCG CGGTGACCAA GAAGCAGGTC
ATCGTCACCC AGAGCGAATA CGAACAGGCC CGCGCCACCG CGGCCGAGCG CCGCCAGGCA
CTGCTGCATT ACGGAATGAC CGAAGCGGCG GTCGAGAAGC TGGCGGCGAG TCAGAAGCTC
GACCCCAGGC TGACCCTGAT CGCGCCGATC GACGGCGTGG TGCTGGAAAG CCCGACCACG
CCGGGCCAGA CCGTCGAGGC GCTGGCGCTG GTGTTCAAGC TGGTGCAGCT CGCGCCGCTG
TGGGCCGAAA TCCAGGTGCC GGCGCTGCGG GCGGAGGATT TCGCGGTCGG CGCCCGCGTC
ACGTTGCGCG GCCATGATTG CATCGGCAAG GTGGTGTCGA TCGGCTCCAG CGTCGAGTCG
ACCTCGCAGA CCGTGATCGT CCGCGCCCAG TTCGACGAGC CCGATACGGA CTTGCGGCCC
GGCCAGGTGG TCGAGGCACA GATCGCCCCT ATCACGAGCG GCTCGGCCGA ATGGCGCGTG
CACAGCGGCG CGATGGTGCG GCGGGGCAAG GACGCGTTCG TGTTCGTGCA GACCGACGGC
GGCTTCGTCG CCACGCCGGT GAAGATCCGT GAGGAGCTTC CACAATTCGC GGTGGTCAGC
GGCAGCTTCC GCGGCGACGA GCGGATCGCG GTACGCGGCA TCGCCGCGCT GAAGGGCGCC
TGGCAGGGAC TCGGCGGGGT CGAGTAA
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| Protein sequence | MLRLSTIPTL LMAAMLACAT AHAGDELSIS KQQAERVGIE TSPLEKQPAA TGLSFPGKIA
VPPDRSRLMN APLGGRIERL LVRTDSVVKA GDLLAEIQSP ALANAQAEYL VAYNKERLLK
TNLDREEQLA PYGAVTKKQV IVTQSEYEQA RATAAERRQA LLHYGMTEAA VEKLAASQKL
DPRLTLIAPI DGVVLESPTT PGQTVEALAL VFKLVQLAPL WAEIQVPALR AEDFAVGARV
TLRGHDCIGK VVSIGSSVES TSQTVIVRAQ FDEPDTDLRP GQVVEAQIAP ITSGSAEWRV
HSGAMVRRGK DAFVFVQTDG GFVATPVKIR EELPQFAVVS GSFRGDERIA VRGIAALKGA
WQGLGGVE
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