| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4706 |
|---|
| Symbol | |
|---|
| ID | 6412392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 5063826 |
|---|
| End bp | 5064371 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642714585 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_001993672 |
|---|
| Protein GI | 192293067 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTCA CCGATTCCCT TCGTGACGAT ATTCTCGCCG CGGTGCCGAG TTTGCGCGCG
TTCGCGATCT CTCTGAGCGG CAACGCCGAT CGAGCCGACG ATCTCGTTCA GGAAACCCTG
CTGCGGGCGC TCGCCAACAT CGACTCGTTT CAGCCGGGCT CCAACCTGCC CGCCTGGTTG
TTCACGATCC TGCGCAACCT GTTCCGCTCT GACTATCGCA AGCGGCGCCG GGAAGTCGAG
GATGCTGATG GCAGCTACGC CAAGACCCTG AAGTCGCAGC CTGGACAGAC CGCGCATCTG
GAGTTCGAGG AATTCCGCGC CGCCCTCGAC AAGCTGCCGC AGGACCAGCG TGAAGCGCTT
ATACTGGTTG GGGCGTCCGG CTTCTCCTAC GAAGACGCCG CTGCGATCTG CGGCTGTGCG
GTCGGTACCA TCAAGAGCCG CGTCAACCGA GCCAGGTCGA AGCTTAGTGC GCTGCTCTAT
GTCGACGGTG CTGAAGACTT CGGACCCGAC GACACTGTCC GTGCCGTGAT CGGCGGTAAC
GGCTGA
|
|---|
| Protein sequence | MPLTDSLRDD ILAAVPSLRA FAISLSGNAD RADDLVQETL LRALANIDSF QPGSNLPAWL
FTILRNLFRS DYRKRRREVE DADGSYAKTL KSQPGQTAHL EFEEFRAALD KLPQDQREAL
ILVGASGFSY EDAAAICGCA VGTIKSRVNR ARSKLSALLY VDGAEDFGPD DTVRAVIGGN
G
|
|---|
| |