| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4625 |
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| Symbol | |
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| ID | 6412311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4985098 |
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| End bp | 4986642 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714504 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001993591 |
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| Protein GI | 192292986 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATGCTC CCGATCTCAC CCGCCCGCCG CTGACGATCC GGCGGATCAG CCTCGACACC
GGCCGCGAAA ACGTCGCGGT GATTTCCCGC CGCTCGCGCG CCCTGCGCCC CGAGGTGTTT
CGCGGCTTCA GCCGCGTCGA ACTGCGCATC AACTCCAAGG TGCTGCTGGC GACGCTGATG
ATCACCGACG ACGACGCGAT GATCGGCCCC GACGAAGTCG GCCTGTCCGA GCCGGCGTTC
CGCCGCTTCA ATGAGCCGGT CGGCAGTGCC GTGTCGGTGA CGCCGGCGCG GTCGCCCGCA
AGCCTCGACG CGGTACGCGC CAAAATCCAG GGCCACACGC TATCCGCGGC GGAGATCACC
GCGATCGTCG ATGACCTCGC GCACTTCCGT TACTCCGACA TGGAAATCGC CGCGTTCCTG
ATCAGCGCCG CGCGCTTCAC CACGACCGAC GAACTGCTGG CGCTGGTCGG CGCGATGGCC
TCGGTCGGGA CCAAACTGAC ATGGGACACG CCGATCGTCG TCGACAAGCA CTGCATCGGC
GGCATTCCCG GCAACCGCAC CACCATGATC GTGGTGCCGA TCGTCGCCGC GCACGGGCTG
ATGATTCCGA AGACCTCGTC GCGCGCCATC ACCTCGCCGG CCGGCACCGC CGACACCATG
GAACTGCTGG CGCGGGTCGA TCTCGACGTC GAGCAGATGA AGCAGGTGGT ACATGCCTGC
GGGGGCTGTT TGGTGTGGGG CGGCCACGTC AACCTGTCGC CTGCCGACGA CATCCTGATA
TCGGTCGAGC GACCGCTCAG CCTCGACACG CCGGAGCAAA TGGTCGCCTC GATCATGTCG
AAGAAGCTCG CCGCCGGCTC GACCCGGCTG CTGATCGACT TCCCGGTCGG CCCGTCCGCC
AAGGTCACGA GCGCCAACGA GGCGATGCGG CTGCGCAAGC TGTTCGAGTT CGTCGGCGAT
CATTTCGGGA TCAGCGTCGA AGTGGTGACC ACCGACGGCC GACAGCCGAT CGGCCGCGGC
ATCGGCCCGG TGCTGGAAGC CCGCGACGTG ATGGCGGTTC TGGGCAACAA GCCCGGCGCA
CCCGCTGACT TGCGCGAAAA ATCGCTGCGG CTCGCTGCGC ATCTGCTTGA ATACGACCCG
AAGCTGCGCG GCGGCACCGG CTATGCCCGC GCCAAGGAGC TGCTCGACAG CGGGGCTGCG
CTGAAGAAGA TGCAGCAGAT CATCGACGCT CAGGGGCCTT CGCCGTGTCC GGCCGAGCTC
GGCAGCTACG CCGCCGATGT ACTCGCTGCG GCCGATGGCG TGGTCAACGG CATCGACTGT
CTGCGCATCA ACCGCCTCGC CCGCAGCGCC GGCGCGCCGG TCGCCAAGGG CGCCGGGATC
GATCTGTTCA AGAAGATCGG CGACCGCGTC GAAAAGGGCG AGCCGCTGTA TCGGGTTTAT
GCGTCCGACC GCTCCGAATT CGATCTGGCG CTGGCAGCCG CACAGGCGGA GTCCGGCTTC
GCGATCAATC ATCACACGCC CGCCGACGTG GATCTGGTGT CGTGA
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| Protein sequence | MNAPDLTRPP LTIRRISLDT GRENVAVISR RSRALRPEVF RGFSRVELRI NSKVLLATLM
ITDDDAMIGP DEVGLSEPAF RRFNEPVGSA VSVTPARSPA SLDAVRAKIQ GHTLSAAEIT
AIVDDLAHFR YSDMEIAAFL ISAARFTTTD ELLALVGAMA SVGTKLTWDT PIVVDKHCIG
GIPGNRTTMI VVPIVAAHGL MIPKTSSRAI TSPAGTADTM ELLARVDLDV EQMKQVVHAC
GGCLVWGGHV NLSPADDILI SVERPLSLDT PEQMVASIMS KKLAAGSTRL LIDFPVGPSA
KVTSANEAMR LRKLFEFVGD HFGISVEVVT TDGRQPIGRG IGPVLEARDV MAVLGNKPGA
PADLREKSLR LAAHLLEYDP KLRGGTGYAR AKELLDSGAA LKKMQQIIDA QGPSPCPAEL
GSYAADVLAA ADGVVNGIDC LRINRLARSA GAPVAKGAGI DLFKKIGDRV EKGEPLYRVY
ASDRSEFDLA LAAAQAESGF AINHHTPADV DLVS
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