| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4525 |
|---|
| Symbol | |
|---|
| ID | 6412209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4877272 |
|---|
| End bp | 4879347 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642714406 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_001993495 |
|---|
| Protein GI | 192292890 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACATTTC CGACCAGTCC CCCGCCGCTC GCGCGAGCTT TGGCGGAGCG CAATTATCTA
CAGGCGACGC CGGTGCAGAG CGCTGTGCTG GCGCCGGACA CCACCGGCCG CGACCTCCTG
GTCTCGGCGC AGACCGGCTC CGGCAAGACC GTGGCTTATG GCCTCGCGAT CGCGCGGGAC
CTGTTGGGCG ACGCCGAGCA GTTTGCGCCC GCCGCAGCGC CGCTGGCACT GATCGTGGCG
CCGACCCGCG AGCTGGCGCT GCAGGTGCAT CGCGAGTTGA GCTGGCTGTA TCGCCACGCC
GGCGGGCGGA TCGTCTCCTG CGTCGGCGGC ATGGACCCGC GCCGCGAGCA GCGCGAGCTG
GCAGACGGCG CCCACATCGT GGTCGGCACG CCGGGGCGGC TGTGCGACCA TCTGCGCCGC
AACCGGCTCG ACGTCTCGCA GCTGAAAGCC GTGGTGCTCG ACGAGGCCGA CGAGATGCTC
GATCTCGGCT TCCGCGAGGA CATGGAGTTC ATCCTCGAAA CCACGCCGGA AACCCGCCGC
ACCCTGCTGT TCTCGGCGAC GCTGCCGCGC GGCATCATCG CGCTGGCCAA GACCTATCAG
CACGACGCAA TGCGGATCGA GGTCGAAGGC GCCGAAGGCG GCCACGCCGA CATCGAGTAT
CGCGCCATCC GCATCGCGCC GAATGACGTC GAGCACGCCG TCGTCAACGT GCTGCGCTAC
GTCGAATCCC CGACCGCGAT CGTGTTCTGC AACACCCGCA GCGCGGTGAA CCATCTGCAG
ACGGCGTTGC TGGAACGCGG CTTCGCCGTG GTGGCGCTGT CCGGCGAACT CACCCAGAAC
GAACGCACCG GCGCGCTCAA CGCGCTGCGC GACGGCCGCG CGCGCGTGTG CGTCGCCACC
GACGTCGCGG CGCGCGGCAT CGATCTGCCG AACCTCGGCC TCGTCATTCA CGCCGAGCTT
CCGAACGACG CCGAAGTGAT GCAGCATCGT TCGGGCCGCA CCGGCCGTGC CGGCAACAAG
GGCATCAGCG TCCTATTAGT TCCGCCGGCC CGGCGGCGGC GCGCCGAACT GCTGCTGCAG
CTCGCCGGCA TCGAGGCGAA CTGGGGCACC GCGCCGCAGG CCGACGAGAT CCGCAGCCTC
GATCAGCAGC GCATGCTGCA GGACCCGCTA TTCACCGAAG AGCCGACCGC CGAAGATCAG
GCCCTGGCGC AGGCGCTGCT CGCCGAGCGC TCGCCCGAGC AGATCGCGGT CGCGCTGGCC
AGGATGGTGC GGGCCCGGAT GCCGGCGCCC GAGGACATTC TCGATCCCGG CGAGCGCCCG
GCCCGCGGCC GCGACGAACG TCCCGGCAAG ACCGCGCGCG AACCGCGCGA TCACGAGGCG
CGCGACAAGG CTCCACGGTC TCGGTCGGCC AAGGCCGGCG AGAAGCACGC GATCACGGGG
GGCGTGTGGT TTCGCGCTGC AATCGGCAAG CGCAAGAACG CCGAAGCGCG CTGGCTGCTG
CCGATGATCT GCCGCCGCGG CGGCATCACC CGGCAGGACA TCGGCGCGAT CCGCATCCTC
GACACCACCA CCGAATTCGA GATCTCGTCC GCAGCTGCCG ACGCCTTCGC GGCGCAGATC
AAGCGCCCCG ATCACGACGA CAACATCCGG ATCGAGCCGC TGATCGGCGC CAAGCCGATC
CCGCCGCGCG ACGACAACCG TCCGCCGCGG CCGGACGCGG ACCGCAAGCC TGATCGCGAG
GCGCGGCGCG CCAAGCGGCC AGCGTCGTGG TCGCCGCTGT CCGGCGAACC GCTGCCCGAT
CACCGCGAAC AGGACGCACC GCGCCCCGGC AAGCGCGTGC CGCACGACGA CGCTCCGCGC
GGCGGCAAGC CGGCGCGGTT CAAGGACAAG GGATTCAAGG CACGCGGCGA GGACGCGTTC
GAGGGCGATT TCAAAGCCAA GCCGTTCAAG ACCGACGGCT TCAAGGCGGG CAAGGCGAAG
GGCGACAAGC CGGCCTATGT CAGCAAGGCC CGCCGCGCCG ATCCGTCGGC CAAGAACCCA
CCGTTCAAGA AGAAGGCGAA GAAGAAGTTT CGCTGA
|
|---|
| Protein sequence | MTFPTSPPPL ARALAERNYL QATPVQSAVL APDTTGRDLL VSAQTGSGKT VAYGLAIARD
LLGDAEQFAP AAAPLALIVA PTRELALQVH RELSWLYRHA GGRIVSCVGG MDPRREQREL
ADGAHIVVGT PGRLCDHLRR NRLDVSQLKA VVLDEADEML DLGFREDMEF ILETTPETRR
TLLFSATLPR GIIALAKTYQ HDAMRIEVEG AEGGHADIEY RAIRIAPNDV EHAVVNVLRY
VESPTAIVFC NTRSAVNHLQ TALLERGFAV VALSGELTQN ERTGALNALR DGRARVCVAT
DVAARGIDLP NLGLVIHAEL PNDAEVMQHR SGRTGRAGNK GISVLLVPPA RRRRAELLLQ
LAGIEANWGT APQADEIRSL DQQRMLQDPL FTEEPTAEDQ ALAQALLAER SPEQIAVALA
RMVRARMPAP EDILDPGERP ARGRDERPGK TAREPRDHEA RDKAPRSRSA KAGEKHAITG
GVWFRAAIGK RKNAEARWLL PMICRRGGIT RQDIGAIRIL DTTTEFEISS AAADAFAAQI
KRPDHDDNIR IEPLIGAKPI PPRDDNRPPR PDADRKPDRE ARRAKRPASW SPLSGEPLPD
HREQDAPRPG KRVPHDDAPR GGKPARFKDK GFKARGEDAF EGDFKAKPFK TDGFKAGKAK
GDKPAYVSKA RRADPSAKNP PFKKKAKKKF R
|
|---|
| |