Gene Rpal_4397 details

Gene Information

• Locus tag: Rpal_4397
• ID: 6412081
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 4723791
• End bp: 4725446
• Gene Length: 1656 bp
• Protein Length: 551 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642714279
• Product: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit
• Protein accession: YP_001993368
• Protein GI: 192292763
• COG category: [C] Energy production and conversion
• COG ID: [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
• TIGRFAM ID: [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region; [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.617771
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGCTC CCACGCCCGT TCCGTCTGCC GCCACCCCGG TTCCGCCCTA TAAGCACACC 
CCGCTGTTTC CTCTGGGCAA GGACGACACC GTCTATCGCA AGATCAGCTC GGCCGGGGTG 
CGGGTGGAGA AGGTGCTCGG GCGCGACATG CTGGTGGTGG AGCGCGAGGC GCTGCGGGCG 
CTGTCGGAGG CGGCGTTCGG CGAGATCAAC CACTATCTGC GGCCAGGCCA CCTCAAGCAG 
CTCCGCAAGA TCCTCGACGA TCCGGAGGCG AGCCCGAACG ACAAGTTCGT CGCGCTGGAT 
TTCCTGAAGA ACGCCAACAT CGCCGCCGGC GGTGTGCTGC CGATGTGCCA GGACACCGGC 
ACCGCGATCA TCATGGGCAA GAAGGGCTCG AACGTCATCA CCGACGGCGA CGACGAGGCG 
GCGCTGTCGG AAGGCGCGCG CGACGCTTAC TTGCGCCGCA ACCTGCGCTA CTCGCAGGTC 
GCGCCGCTGT CGATGTTCGA AGAGAAGAAC ACCGCCAACA ACATGCCGGC GCAGTGCGAG 
ATCTACGCCG AGGGCGATGA CGCCTACAAG TTCATGTTCA TGGCCAAGGG CGGCGGCTCG 
GCCAACAAGA GCTTCCTGTT CCAGGCGACG CCGTCGCTGC TGACCCGCGA CCGGCTGTTG 
GCGTTCCTGA AAGAGAAGAT CATGACGCTC GGCACCGCGG CGTGCCCGCC CTATCACCTG 
GCGATCGTGA TCGGCGGCAC TTCGGTCGAG ACCACGATGA AGACGGTGAA GCTCGCATCC 
GCACGCTATC TCGATGCGCT GCCGACCCAC GGCTCCGAAT TCGGCAACGC CTTCCGCGAC 
GTCGAGATGG AGCAGGAAAT CCACAAGATG ACGCAGAGCC TCGGCGTCGG CGCGCAGTTC 
GGCGGCAAGT ATTTCTGCCA CGACGTTCGC GTTATCCGGC TGCCGCGCCA CGGCGCCTCG 
TTGCCGATCG GGCTTGGGGT GTCGTGCTCG GCCGACCGCC AGATGGTCGG CAAGATCACC 
AAGGACGGCG TGTATCTGGA GGAGCTGGAG CACAATCCGG CGCAGTATCT GCCGGAAGTC 
GAGCAGGCGC TGGGCGGTGA GGTGGTGAAG ATCGACCTCA ACCAGCCGAT GAAGGACGTC 
CTCGCCACGC TGAGCAAGCA CCCGATCAAG ACCCGGCTGT CGCTGACCGG CACCATGATC 
GTGGCGCGCG ACGCCGCCCA TGCCAAGCTG CGCGACCGGC TGGAGAAGGG CGAGCCGCTG 
CCGGATTACT TCAAGAACCA CCCGGTGTAC TACGCCGGTC CGGCCAAGAC CCCGGACGGC 
TATGCTTCCG GCGCGTTCGG CCCGACTACC GCGGGGCGCA TGGACTCGTT CGTCGATCAG 
TTCCAGGCGG CCGGCGGCTC GATGGTGATG GTCGCCAAGG GCAACCGCGC GCCGGCGGTG 
CGCGAGGCCT GCAAGAAGTA CGGCGGCTTC TACCTCGGCT CGATCGGCGG CGCTGCGGCC 
AACCTCGCCG AGCACTGCAT CAAGAAGGTC GAGGTGCTGG AATATCCCGA GCTCGGCATG 
GAGGCGATCT GGAAGATCGA CGTCGTCGAC TTCCCGGCCT TCATCATCGT CGACGACAAG 
GGCAACGACT TCTTCAAGGA ACTGAATCTG GGCTGA 

 

Protein sequence

MNAPTPVPSA ATPVPPYKHT PLFPLGKDDT VYRKISSAGV RVEKVLGRDM LVVEREALRA 
LSEAAFGEIN HYLRPGHLKQ LRKILDDPEA SPNDKFVALD FLKNANIAAG GVLPMCQDTG 
TAIIMGKKGS NVITDGDDEA ALSEGARDAY LRRNLRYSQV APLSMFEEKN TANNMPAQCE 
IYAEGDDAYK FMFMAKGGGS ANKSFLFQAT PSLLTRDRLL AFLKEKIMTL GTAACPPYHL 
AIVIGGTSVE TTMKTVKLAS ARYLDALPTH GSEFGNAFRD VEMEQEIHKM TQSLGVGAQF 
GGKYFCHDVR VIRLPRHGAS LPIGLGVSCS ADRQMVGKIT KDGVYLEELE HNPAQYLPEV 
EQALGGEVVK IDLNQPMKDV LATLSKHPIK TRLSLTGTMI VARDAAHAKL RDRLEKGEPL 
PDYFKNHPVY YAGPAKTPDG YASGAFGPTT AGRMDSFVDQ FQAAGGSMVM VAKGNRAPAV 
REACKKYGGF YLGSIGGAAA NLAEHCIKKV EVLEYPELGM EAIWKIDVVD FPAFIIVDDK 
GNDFFKELNL G