Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4263 |
Symbol | |
ID | 6411947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4584508 |
End bp | 4585347 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642714145 |
Product | squalene synthase HpnD |
Protein accession | YP_001993234 |
Protein GI | 192292629 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGTTC ACGCCACGCC AGAGCCGGCC GCACATCAAG GTGTCGCGCT CGGCAGTTCG TTCTACGCCG CGATGCGCAT CCTGCCGCGT CCGCAGCGCG AGGCGATGTT CCAGGTCTAC AGCTTCTGCC GCTTCGTCGA CGACATCGCC GATTCCGATC GGCCGCGCGA GCAGCGGGTC GCCGAGCTGC AGCAATGGCG CGACGACATC GCCGCGCTGT ATCGCGGTGC GCCGCCGCCG CGGCTCGCCG ACTATCAGGA GTCGCTGCGC ACTTTCGGGC TGAAGCGCGA GGACTTCGAG GCGATCATCG ACGGCATGGA GATGGATGTC GACGCCGACA TCCGCGCGCC CGATGAGGCC ACGCTCGATC TGTACTGCGA CCGCGTCGCC AGCGCGGTGG GACGGCTGTC GGTGCGGATC TTCGGCCTTC CGGAAGCCGA CGGCATCGAG CTGTCGCATC ATCTCGGACG CGCGCTGCAG CTCACCAACA TCCTGCGCGA CATCGACGAG GACACCGGCA TCGGCCGGCT GTATCTGCCG AGCGAGCTGC TGCACAAGGT CGGTATCACC GCAACCGATC CGCGCGTGGT CGCGGCGGAT TCTGCGCTGC CGAGCGTCTG CGCGCCGCTG GTCGAGCGTG CGCTCGCGCA TTTTGCCGCC GCCGACAAGG TGATGAACCG TAATCCGCGC CGGGTGGTGA AAGCTCCCCG TATCATGGGC AAGTACTACT ACTCGATCTT GCAGCTTTTG ATCGCGCGCG GTTTCGCAGC GCCGCGCGCC CCGGTGAAGC TCGGCAAGGC TTCGAAGATC GCCATCCTGC TGCAATACGC GATCGTGTGA
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Protein sequence | MTVHATPEPA AHQGVALGSS FYAAMRILPR PQREAMFQVY SFCRFVDDIA DSDRPREQRV AELQQWRDDI AALYRGAPPP RLADYQESLR TFGLKREDFE AIIDGMEMDV DADIRAPDEA TLDLYCDRVA SAVGRLSVRI FGLPEADGIE LSHHLGRALQ LTNILRDIDE DTGIGRLYLP SELLHKVGIT ATDPRVVAAD SALPSVCAPL VERALAHFAA ADKVMNRNPR RVVKAPRIMG KYYYSILQLL IARGFAAPRA PVKLGKASKI AILLQYAIV
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