| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4214 |
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| Symbol | |
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| ID | 6411898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4519001 |
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| End bp | 4520896 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642714096 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_001993185 |
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| Protein GI | 192292580 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.159532 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGTTGA CCCGACGACA TCTTCTGCAG GGCGGCTTGT TGGCCGCAGC GACCCCGGCT
TTGAGCTTCA GCCCCGGCCT GTTTGGGGCG AGCGCGGCGC GCGCCGAAAC CGCGGTCGAT
GGGGCGGCAT GGCGCCACGG TCTGTCGCTG TTCGGGGAGC TGAAATATCC GGCCGGCTTC
GCGCAGTTCG ATTATGTGAA TCCGAAAGCA CCGAAGGGCG GTGCCGCGCG GCAGATCGCG
CTAGGCACCT TCGACAATTT CAATCTCGCG GTCGCCGGCG TGAAAGGTAA CATCGCCGGG
CCGGTGGGGT ATCTCTACGA AACCCTGATG ACGCCGTCGC AGGACGAGGT CGGCACCGAA
TACGGCTTGC TCGCCGAGGG CGCTGCGCAT CCCGACGATT TTTCCTGGGT GATCTATCGC
GTGCGCAAGG AAGCGCGCTG GAACGACGGC AAGCCGGTCA CGGCCGACGA CGTCGTCTTT
TCGTTCGATG CGCTGAAGAA ATACAGCCCA CGCTACGCCT CGTATTATCG TCACGTCGTC
AAGGCCGAGA AGGTCGGCGA GCGCGACGTC CGCTTCACCT TCGATGCGCC GGGCAACCGC
GAACTGCCGA CCATCGTCGG CGAATTGATG GTGCTGCCGA AGCATTGGTG GGAGGGCACT
GACGCCCAGG GGCGCAAGCG CGACGTCTCG GCAACAACGC TGGAGCCTCC GCTCGGCTCG
GCGCCCTACA AGATCAAGGA CTTCGTCGCC GGCCGTTCGA TCGTGCTGGA GCGCGTGAAG
GACTATTGGG GCGAGAAGCT GCCGGTGCGG ATCGGCCAGA ACAATTTCGA CGAGCTGCGG
TTCGAGTACT TCCGTGACAA CACCGTCGCA CTGGAGGCCT TCAAGGCCGA CCAGGCCGAC
TGGATCATGG AGAACTCCGC CAAGCAGTGG GCGACTGCCT ACGACTTTCC CGCGGTGAAC
GACAAGCGTG TTGTCAAAGA AGAATTCCCG ATCAACGATT CGGGACGGAT GCAGGCGTTC
GTGCTGAATA CCCGCCGCGA GATGTTCAAG GATCCGCGGG TGCGGCGCGC GTTCAACTAC
GCGTTCGATT TCGAAGAGAT GAACAAGCAG CTGTTCTATG GACAGTACAA GCGGATCGCG
AGCTTCTTCG AAGGCACCGA GCTCGCCTCC AGCGGACTAC CTGAAGGGCA GGAACTGGCG
CTGCTCGAAA CCGTGCGCGA CAAGGTGCCG GCCGAGCTGT TCACGCAGCC CTATACCAAT
CCAGTCGGCG GCAACCCGGA GGCGGTACGC GCCAATCTCC GTGAGGCGAT CAAGCTGGTG
AAAGAGGCTG GCTTCGACAT CAAGGATCGC AAACTGGTCG ATCCGTCCGG CAAGCCGGTC
GCTGTCGAGA TCCTGGTGCA GGACCCGTCG TCGGAGCGGA TTGCGCTGTT CTACAAGCCT
TCGCTGGAGC GGCTCGGCGT CACCGTCTCG ATCCGCGTGG TCGACGACGC GCAGTATCAG
AACCGGATTC GCGCGTTCGA TTTCGACATC ATCACCGACC TGTGGGGCCA GTCGCTGTCG
CCCGGTAATG AACAGCGCGA TTATTGGGGA TCACAGGCGG CCAATGAGCA GGGCTCGCAC
AACACCATCG GCATCAAGAA TCCGGCCGTC GATGAGCTGA TCGAAAAGGT GATCTACGCC
AAGGACCGGC CCTCGTTGAT TGCGGCGACG CGAGCGCTCG ACCGCGTGCT GCTGTGGAAC
TTCTATGTCG TCCCACAATT CACCTACGGC TTCATGCGCT ACGCGCGCTG GGACCGGTTT
GGGCACGCGC CGCTGCCGAA ATACGCTCGC TCTGGTCTGC CGGCGTTGTG GTGGTACGAC
GCCGACAAGG CCGCCAATCT CGGCAAGCGC TCTTGA
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| Protein sequence | MTLTRRHLLQ GGLLAAATPA LSFSPGLFGA SAARAETAVD GAAWRHGLSL FGELKYPAGF
AQFDYVNPKA PKGGAARQIA LGTFDNFNLA VAGVKGNIAG PVGYLYETLM TPSQDEVGTE
YGLLAEGAAH PDDFSWVIYR VRKEARWNDG KPVTADDVVF SFDALKKYSP RYASYYRHVV
KAEKVGERDV RFTFDAPGNR ELPTIVGELM VLPKHWWEGT DAQGRKRDVS ATTLEPPLGS
APYKIKDFVA GRSIVLERVK DYWGEKLPVR IGQNNFDELR FEYFRDNTVA LEAFKADQAD
WIMENSAKQW ATAYDFPAVN DKRVVKEEFP INDSGRMQAF VLNTRREMFK DPRVRRAFNY
AFDFEEMNKQ LFYGQYKRIA SFFEGTELAS SGLPEGQELA LLETVRDKVP AELFTQPYTN
PVGGNPEAVR ANLREAIKLV KEAGFDIKDR KLVDPSGKPV AVEILVQDPS SERIALFYKP
SLERLGVTVS IRVVDDAQYQ NRIRAFDFDI ITDLWGQSLS PGNEQRDYWG SQAANEQGSH
NTIGIKNPAV DELIEKVIYA KDRPSLIAAT RALDRVLLWN FYVVPQFTYG FMRYARWDRF
GHAPLPKYAR SGLPALWWYD ADKAANLGKR S
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