| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4076 |
|---|
| Symbol | |
|---|
| ID | 6411760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4375978 |
|---|
| End bp | 4377027 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713958 |
|---|
| Product | permease |
|---|
| Protein accession | YP_001993047 |
|---|
| Protein GI | 192292442 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0701] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0164237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCA GCGACTTCAC CGGGAAACCT CGCCCACTGA CCACCAAGCT GCTCGTCACC
GTCCTGCTGG TGGTGCTGTG GGTGGTGGTC TATGCGGCGC TGTCGCCGGC TTCGGAATGG
ATCGTGCGTC AGCTTCCGCT CGATCCGGCG GGCGGCACTG CGCGGGCGCT GGCGTTCTTC
ATCTACGATA CCCCGAAGGT GTTGATGCTG CTGACGCTGA TCGTGTTCGC GATGGGCGTG
GTGCGCAGCT TCTTCTCGCC TGAACGCACC CGCGCGCTGC TCGCCGGGCG GCGCGAGGGC
GTCGGCAATG TCGCCGCGGC CGGGCTCGGC GTGCTGACGC CGTTCTGCTC GTGCTCGGCG
GTGCCGCTGT TCATCGGCTT TGTCAGCGCT GGCGTGCCAC TCGGGGTGAC GTTCTCGTTC
CTGATCGCAG CGCCCTTGGT CAACGAGGTC GCGCTCGGGC TGCTGCTGGC GCTGCTCGGC
TGGAAAGTGG CGCTGCTGTA TCTGCTGCTC GGCCTCGCGG TCGCGATCGT CGCCGGCATG
GTGATCGGCC GGCTGCATCT CGAAGGCTGG CTGGAGGATT GGGTGCGGGC GCTGCGCACC
GAGGCGGCGC CGCTCGCAGC CGAACGCCTC AGCGCCTCGG ACCGGATCGA CGCCGGGGTC
GAGGCGGTGC GCGACATCGT CGGGCGGGTG TGGCCGTGGA TCATCGCCGG CATCGCGATC
GGCGCCGGCA TTCACGGCTG GGTGCCGGAA GGTCTGCTCG CCGGGATCAT GGGACGCGAG
GCGTGGTGGT CGGTGCCGGC CGCGGTGGCG ATCGGCATCC CGATGTACTC CAACGCCGCT
GGGATTGTTC CGGTCGTCGA GGCGTTGCTC GGCAAGGGCG CCGCGCTCGG CACCACGCTG
GCGTTCATGA TGAGCGTTAC CGCGCTGTCG GCGCCGGAAC TGATCATCTT GCGCAAGGTG
CTGACGGTCC GGCTGATCGC CGTGTTCGTA GCTGTCGTCG GCCTCGGCAT CCTGGCGGTC
GGCTATCTGT TCAATTTCCT GTTCGGCTGA
|
|---|
| Protein sequence | MTASDFTGKP RPLTTKLLVT VLLVVLWVVV YAALSPASEW IVRQLPLDPA GGTARALAFF
IYDTPKVLML LTLIVFAMGV VRSFFSPERT RALLAGRREG VGNVAAAGLG VLTPFCSCSA
VPLFIGFVSA GVPLGVTFSF LIAAPLVNEV ALGLLLALLG WKVALLYLLL GLAVAIVAGM
VIGRLHLEGW LEDWVRALRT EAAPLAAERL SASDRIDAGV EAVRDIVGRV WPWIIAGIAI
GAGIHGWVPE GLLAGIMGRE AWWSVPAAVA IGIPMYSNAA GIVPVVEALL GKGAALGTTL
AFMMSVTALS APELIILRKV LTVRLIAVFV AVVGLGILAV GYLFNFLFG
|
|---|
| |