| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3972 |
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| Symbol | |
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| ID | 6411653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4263895 |
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| End bp | 4267032 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713853 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001992943 |
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| Protein GI | 192292338 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCGGA GCATCTCGGC GCCGTTCATC CGCTACCCGA TCGCGACCTC GCTGTTGATG
GCGGGGATCC TGTTCCTCGG CCTGATCGCC TACCCTGCGC TGCCGGTGGC GCCGCTGCCG
CAGGTCGACT TCCCGACCAT CCAGATTTCG GCCAGCCTGC CCGGGGCCAG CCCTGAAACA
ATGGCCTCGT CGGTGGCCAC GCCGCTGGAG CGTCAGCTCG CGCAGATCCC CGGCATATCG
CAGATGACGT CGACGAGTTC GCTGGGCTCG ACCGCGGTCA CCATCCAGTT CGATCTCAAC
CGCAACATCG ACGCCGCCGC CAACGACGTC CAAGCGGCGA TCAACGCCGC GGGCGGCCAG
TTGCCGAAGA ACCTGCCGAC CCCGCCGACC TACCGCAAGG TCAACCCGGC CGACGCGCCG
ATCCTGATCC TGTCGGCGAC CTCCGACACC CTGCCGCTGA CCACCGTCAG CGACAACGCC
GACGCCAAGA TCGCCCAGCA GATCAGCCAG ATCACCGGCG TCGCCCAGGT GTTCATCGGC
GGCCAGCAGA AGCCGGCGAT CCGGATCCAG GTCGATCCGG CCAAGCTGAT GACCAAGGGG
CTGTCGCTCG AGGACGTCCG CGCCCAGATC GCGATCACCA CCGTCGACAG TCCCAAGGGC
ACGCTTGACG CGCCGAACCG CAGCTACACC ATCTACGCCA ACGACCAGCT CACCGAGTCC
AAGGACTGGA ACGACGTCAT CCTCGCTTAT CGCAACGGCG GCCCGCTGCG GATTCGTGAC
GTCGGTCATG CGGTGACCGG CCCGGAGGAC GCCAAGACCG CGGCCTGGGC CAACGGCAAG
CGCGGCGTAT TCCTGGTGGT GTTCAAGCAG CCCGGCGCCA ACGTCATCGA CACCGTCGAC
CACATCAAGG CGGAACTGCC GCGGCTGGTG GCGGGCATTC CGCCGGCCAT CAAGGTCGAG
GTGATCAGCG ACCGCACCAC CACCATCCGC GCCGCGGTCG AGGACGTGCA GTTCACCCTG
CTGCTGACCA TCGCGCTGGT GGTGATGGTG ATCTTCCTGT TCCTGCGCAG CTTCTGGGCG
ACCATCATCC CCAGCGTGAC GGTGCCACTG GCGCTGCTCG GCGCCTGCGC GCTGATGTGG
GCGGCCGGCT ACACGCTCGA CAACCTGTCG CTGATGGCGC TGACGATCTC GGTCGGCTTC
GTGGTCGACG ACGCCATCGT GATGCTGGAG AACATCGCCC GCCATATCGA AGAAGGCGAG
AAGCCGTTCA CCGCGGCGCT GAAGGGCGCG CGCGAGATCG GCTTCACCAT CGTGTCGATC
TCGATCTCGC TGGTCGCGGT GCTGATCCCG CTGTTGTTCA TGGGCGGCAT CATCGGCCGG
CTGTTCCGCG AATTCGCGGT GACGCTGGCG ATGACCATCG CGGTGTCGAT GCTGGTGTCG
CTGACGCTGA CGCCGATGAT GGCATCGCGC TTCATGCGGC CGGCCACCGA GGTGCGCCAC
GGCCGGATCT ATCAGTGGAT CGAAGGCGCC TTCGAGGCGA TGCTGCGCGC TTATGAACGC
GGCCTCGACC TGGTGCTGCG TTGGCGCTTC ACGACGCTGA TGGTGTTCTT CGCCACGGTG
GGGCTGTCCG TCTATCTGTT CGTGGCGATC CCGAAGGGCT TCTTCCCGCA GCAGGACGTC
GGCATGATCA CCGCGACGTC GGAAGCCGCG CAGGACATCT CCTTCACCGG GATGAAGCAG
CGCCAGGAGC AGCTCGGCGC AATCGTGATG GCCGATCCCG ACGTCGACAG CGTTGCGATG
TTCATCGGCG GCAGCGGCAC CGCGCTCAAC ACCGGGCGAA TGTTCATCAC GCTGAAGCCG
CGCGACGAGC GCTCCGGCAG CGCGCAGGAA ATCATCGCGC GGCTGCGGCC GAAGCTGGAG
AAGGTCGAAG GCGCGCGGCT GTTCATGCAG GCGGCGCAGG ACGTCCGGCT CGGCGGCCGG
CCAACCCGTA CCCAGTTTGA ATACACCCTG CAGGACGCCA ACCTCGCCGA GCTCAACGAG
TGGGCGCCGA AGGTGCTGGC CAAGATGCAG TCGCTGCCGC AACTGCGCGA CGTCGCCACC
GACCAGCAGA CCGAAGGCAC CACGCTGACG CTGACGATCG ACCGCGACAC CGCCTCGCGC
TTCGGCATCA AGCCGCAACT GATCGACGAC ACGCTGTATG ACGCGTTCGG CCAGCGCCAG
GTGACGCAGT ACTTCACCCA GGTAAACACT TACCGGATCA TCCTGGAGGT GCTGCCGGAG
CTACAGGGCC GGCTCGACAC ACTGAACCAG ATCCACATCA AGTCGCCGAC CAGCGGCGAT
CAGGTTCCGC TGTCGACGTT TGCGAAATGG ACGACGGTGC CGGTGCGGCC GCTGTCGATC
AGCCACCAGG GCCAGTTCCC GGCCACCACG ATCAGCTTCA ATCTGGCGCA GGGCGTCGCG
CTCGGTCAGG CGACCGAAGC GGTGCAGGCG GCGATGGCCG AGATGGGCGC ACCGCCGACG
CTGACCGGCA GCTTCCAGGG CACCGCGCAG GCGTTCCAGC AGTCGCTATC GACAGTGCCG
CTCTTGATCG TCGCGGCGCT GGTCGTGGTC TATCTGATCC TCGGCATCTT GTACGAGAGC
TACATCCACC CGCTGACGAT TCTCTCGACC CTGCCCTCGG CCGGCGTCGG CGCGCTGGCG
ATGCTGATGC TGTTCGGCTT CGACTTCAGC CTGATCGCGC TGATCGGCAT CATCCTGCTC
ATCGGCATCG TGAAGAAGAA CGGCATCATG ATGGTCGACT TCGCCATCAC CGCCGAGCGC
GACGAGCACC TCAATCCCGA GCAGGCAATC CGTAAGGCGG CGCTGCTGCG CTTCCGCCCG
ATCATGATGA CCACGATGGC GGCGATGCTC GGCGGCGTGC CGTTGATGCT CGGCACCGGT
ACCGGCTCGG AGATCCGCCA GCCGCTCGGC TACGCTATGG TCGGCGGCCT GCTGGTCAGC
CAGGCGTTGA CGCTATTCAC CACCCCGGTG GTGTATCTCT ATCTCGATCG CCTCTCCAAC
GCGCTGACCA ACTGGGGCCG CACCCACATC CCGGTCGACG AGGACGAAGA CGACCGCGTC
CAGCGCGCGG CGGAGTGA
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| Protein sequence | MDRSISAPFI RYPIATSLLM AGILFLGLIA YPALPVAPLP QVDFPTIQIS ASLPGASPET
MASSVATPLE RQLAQIPGIS QMTSTSSLGS TAVTIQFDLN RNIDAAANDV QAAINAAGGQ
LPKNLPTPPT YRKVNPADAP ILILSATSDT LPLTTVSDNA DAKIAQQISQ ITGVAQVFIG
GQQKPAIRIQ VDPAKLMTKG LSLEDVRAQI AITTVDSPKG TLDAPNRSYT IYANDQLTES
KDWNDVILAY RNGGPLRIRD VGHAVTGPED AKTAAWANGK RGVFLVVFKQ PGANVIDTVD
HIKAELPRLV AGIPPAIKVE VISDRTTTIR AAVEDVQFTL LLTIALVVMV IFLFLRSFWA
TIIPSVTVPL ALLGACALMW AAGYTLDNLS LMALTISVGF VVDDAIVMLE NIARHIEEGE
KPFTAALKGA REIGFTIVSI SISLVAVLIP LLFMGGIIGR LFREFAVTLA MTIAVSMLVS
LTLTPMMASR FMRPATEVRH GRIYQWIEGA FEAMLRAYER GLDLVLRWRF TTLMVFFATV
GLSVYLFVAI PKGFFPQQDV GMITATSEAA QDISFTGMKQ RQEQLGAIVM ADPDVDSVAM
FIGGSGTALN TGRMFITLKP RDERSGSAQE IIARLRPKLE KVEGARLFMQ AAQDVRLGGR
PTRTQFEYTL QDANLAELNE WAPKVLAKMQ SLPQLRDVAT DQQTEGTTLT LTIDRDTASR
FGIKPQLIDD TLYDAFGQRQ VTQYFTQVNT YRIILEVLPE LQGRLDTLNQ IHIKSPTSGD
QVPLSTFAKW TTVPVRPLSI SHQGQFPATT ISFNLAQGVA LGQATEAVQA AMAEMGAPPT
LTGSFQGTAQ AFQQSLSTVP LLIVAALVVV YLILGILYES YIHPLTILST LPSAGVGALA
MLMLFGFDFS LIALIGIILL IGIVKKNGIM MVDFAITAER DEHLNPEQAI RKAALLRFRP
IMMTTMAAML GGVPLMLGTG TGSEIRQPLG YAMVGGLLVS QALTLFTTPV VYLYLDRLSN
ALTNWGRTHI PVDEDEDDRV QRAAE
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