Gene Rpal_3968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3968 
Symbol 
ID6411649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4258710 
End bp4259399 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content62% 
IMG OID642713849 
Productputative hydroxylase 
Protein accessionYP_001992939 
Protein GI192292334 
COG category[S] Function unknown 
COG ID[COG3128] Uncharacterized iron-regulated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.713172 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGGTCT GTATTCCCGA GGTTCTGCCG AAGTCCGAGG TCGCGGAATT CCGCCGCCTG 
ATGGACGCCG CCGATTGGGA GGATGGCCGC TCCACCGCCG GCGCGCAGTC GGCGATGGTC 
AAGCGCAACG AGCAATTGCC GCCCGACAGC GATCTGGCGC GCACGCTGGG GCGGCGGATC 
GTGTCGGCGC TCACCGGCAA TCCGAAGTTC GTCTCCGCCG CGGTGCCGCT GCAGATCTTC 
CCGCCGCTGT TCAATCGCTA CGCGGCGTCG GGCGGCCATC ATTTCGGCAT CCATGTCGAC 
AATGCGGTGC GCGGTGATCA TCTCACCGGT CTGCGCATTC GCACTGATCT GTCGGTCACA 
TTGTTCTTGG CCGAGCCGGA CGAGTACGAC GGCGGCGAAC TCGTGATCGA AGACACTTAT 
GGCTCGCACG AGGTCAAATT GGCCGCGGGC GATGCCGTGC TGTATCCGTC CACCAGCCTG 
CACATGGTGA CTCCGGTCAC GCGCGGCGCA CGGGTGGCGT CTTTTTTCTG GCTGCAGAGC 
ATGATACGTG ATGCGCAGGC GCGCAGCATG ATCTACGATC TCGATAACGC CATTCAGGCC 
CTTGTCGAGC GGCTGGGACG CGATGACCCT GAAACGGTCA AATTGACCGG TATTTATCAC 
AACCTCATCC GCTACTGGGC CGAAGTATGA
 
Protein sequence
MLVCIPEVLP KSEVAEFRRL MDAADWEDGR STAGAQSAMV KRNEQLPPDS DLARTLGRRI 
VSALTGNPKF VSAAVPLQIF PPLFNRYAAS GGHHFGIHVD NAVRGDHLTG LRIRTDLSVT 
LFLAEPDEYD GGELVIEDTY GSHEVKLAAG DAVLYPSTSL HMVTPVTRGA RVASFFWLQS 
MIRDAQARSM IYDLDNAIQA LVERLGRDDP ETVKLTGIYH NLIRYWAEV