| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3948 |
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| Symbol | |
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| ID | 6411629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4235454 |
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| End bp | 4236614 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713829 |
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| Product | TRAP transporter solute receptor, TAXI family |
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| Protein accession | YP_001992919 |
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| Protein GI | 192292314 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGAC GTTTCGGTCC GCTCGCGGCG TTCGCCGTGG GCTGCGCGCT GATCACTACA
ACCGCTGCGC GTGCCGACGA CATCAAGCTA CCAACCACGA TGGCATTCAC TGCGTACGAC
ACCGGCACCG CCGGTTTCAA CATCGCGGTC GCGGTCGGCA AGATGATGAA GGACAAGCAC
GGCACCGACG TTCGCGTGCT GCCCGCCGGC AACGACGTCG CCCGCCTCGC CCCGCTGCGG
AACGGCCGCG CCCAACTCGC CTGGATGGGA TCTGGCACTT ACTTCGCGCA GGAGGGCGTG
TTCGAGTTCG GCGCCAAGGA ATGGGGCCCG CAGCCGCTGC AGATCACGCT CAGCGTCGTC
GACTGCAACG GCTCCTCGCT CGGCGTCGCC GCCGACATCG GCGTCAAGGA GGTCAAGGAT
CTGCGCGGCA AGCGCGTGGG CTTCGTGGTC GGCTCGCCGG CGCTCAACCA GAATGCGCTC
GGCATCATGG CCTATGGCGG CCTGACCAAG GACGACGTCA AGATCGTCGA GTTCGCCAGC
TACGGCGCGA TGTGGAAGGG GCTGGTCAAC AACGATGTCG ACGCCGCATT CGGCACCACC
ATCACCGGTC CGGCACGAGA GGCCGAGAGC TCGCCGCGCG GCCTGATCTG GCCTCCGATG
CCGCATGCCG ACAAGGCAGC GTGGGAACGC GTCAAGAAGG TCGCGCCGTT CTTCAATCCG
GCGATGTCGA GCTGCGGCGC CGCGCACCAG CCCGGCAAGC CGATCGAACT GTCGAACTAC
CCCTACCCGA TCGCCACCGT GTACGCGACG CAGTCGCCCG ATCAGGTGTA CTCGATCACC
AAGGCGATGA TCGTCGATTA CGACGCCTAC AAGGACAACG CGCCCGGCGC CACCGGCCTC
GCGGTGAAAA CCCAGACCAT GAAATGGGTG GTGCCGTTCC ATCCCGGAGC CGTCAAGGCG
CTGAAAGAAG CCGGCCAGTG GACCGCCGAG GATCAGACTC ACAATGATGG GCTGATCAAG
CGCCAAGAAG TGCTGGCCGC GGCGTGGAAG CAGTACGCGG CCGCGGCGCC GTCCGGTGAT
CAGGAATTCC GCGATGGCTG GATGACGGCG CGCGCCGCAG CGCTGAAGCG GGCGAACCTG
CCGAACGGGT TCGAGCAGTA A
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| Protein sequence | MTGRFGPLAA FAVGCALITT TAARADDIKL PTTMAFTAYD TGTAGFNIAV AVGKMMKDKH
GTDVRVLPAG NDVARLAPLR NGRAQLAWMG SGTYFAQEGV FEFGAKEWGP QPLQITLSVV
DCNGSSLGVA ADIGVKEVKD LRGKRVGFVV GSPALNQNAL GIMAYGGLTK DDVKIVEFAS
YGAMWKGLVN NDVDAAFGTT ITGPAREAES SPRGLIWPPM PHADKAAWER VKKVAPFFNP
AMSSCGAAHQ PGKPIELSNY PYPIATVYAT QSPDQVYSIT KAMIVDYDAY KDNAPGATGL
AVKTQTMKWV VPFHPGAVKA LKEAGQWTAE DQTHNDGLIK RQEVLAAAWK QYAAAAPSGD
QEFRDGWMTA RAAALKRANL PNGFEQ
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