| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3909 |
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| Symbol | |
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| ID | 6411589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4197367 |
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| End bp | 4198866 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642713791 |
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| Product | porin |
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| Protein accession | YP_001992882 |
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| Protein GI | 192292277 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTG CGAAGAGCCT TATGCTCGGT GGTGCGGCGC TCCTGGTCGC CACCGCTGGT
GCGCAGGCGG CCGATCTTCC GCTGAAGGCC AAGGCGGTCG AATACGTGAA GGTCTGCTCG
CTGTACGGCG CCGGCTTCTA CTACATCCCG GGCACCGACA CCTGCATCAA GCTCGGGGGC
TACATCCGCG CCGAGTACGC GTTCAACGCC GGCGGCATGA CGGAAACCCC GTCGTGGAAC
GGTAGCGCCG GTCAGGGCAA CCGGCTTGCC AACAACACCA TCTATCGTTC GCGTGCCGAC
CTGAACATCG ACACCCGCAC CGCGACTGAA TACGGCGTGG TTCGCACCTA CTTCGACTCG
GTATTCACCT GGACCACCGG CAGCGACACC GTCGCCAACG GCAGCCTCGG CGTGTACTTC
GCGTTCGTGC AGTTCGCCGG CTTCACCTTC GGTAAGGCGG TCTCGCAGTT CTCGACCCCG
TGGCATGGTT CGCCGGGCAA CATCACCTCG AACCTGCTCG GCGGCGACGA CACCTCGACC
GGCGTCAATC AGGTCAGCTA CACTGCCGAA TTCGGCAACG GCGTGTCGGC CTCGATCAGC
CTCGAAGACC AGTCCGGCTA CCGCTGGGCG CAGGGCAACT CGGGCGCCAA TATCTCGCTG
CTGAACGTGA CCGCGGGTAA CGGTAGTCCA TCGTCCTGGC TGAGCGGCCT CGGCAGCTAC
ACTGGCAACA GCTACTCGGC CGGCACCAGC ATCCCTGACA TCGTCGGCAA GGTTCGCGTC
GATCAGGCTT GGGGCCTCTT CCAAGTGTCC GCGGCAGCGC ACCAGATCCG TGCCAGCTAC
TACAACCCCG CCAACGAATG GTCTGATCAT CCGGGTGATA AGTGGGGCTA CGCGGTTCTC
GCCGCCCTGT CGCTCAAGAA TCTGCCCACT GGCCCTGGCG ACTCGATCAA CCTCGACGCG
ACCTATGCGG ATGGCGCGAT CCGCTACGTG ATCGGCGGTA CCAGCCCGAA CTATTTCTCG
ATCTTCGGCA ATAACGCCGA TGCTGGCGCC TATCAGACCC TCGGTCTGGG CACCGCCGTC
GACGGCGTGT TCGTTAACAC CGGCGGCATC GAAACCACCA AGGCCTGGGG TATCCGGGGC
GCCTTCAACC ACAACTGGAA CCCGAACTGG GCGACTTCGA TCTTCGGTTC GTACTCGTCC
GTGGACTTCG GCAGCACCGG CGGTGCTCTC TACACGGCCG GCCTTCGGGC TCAAGCTGGC
GCTGGCAACA CCATTGCCGG AAACCCGAAC TTCAACATCG CTCAGATCGG CACCCGCACC
TCGTGGACCC CGGTCAAGAA CCTGACGTTC TCGGGCGAAG TGATGTGGAC CCGCCTCGAC
CAGAACTACT CGGGCTTCAC CGGTTCGGTG TCGCCGGGTG GTACCAAGCC GACCACGGTC
TACCAGTTCA AGGATCAAGA CACCGTGGTG GGCGCGGTTC GCGTCCAGCG CACCTTCTAA
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| Protein sequence | MNFAKSLMLG GAALLVATAG AQAADLPLKA KAVEYVKVCS LYGAGFYYIP GTDTCIKLGG
YIRAEYAFNA GGMTETPSWN GSAGQGNRLA NNTIYRSRAD LNIDTRTATE YGVVRTYFDS
VFTWTTGSDT VANGSLGVYF AFVQFAGFTF GKAVSQFSTP WHGSPGNITS NLLGGDDTST
GVNQVSYTAE FGNGVSASIS LEDQSGYRWA QGNSGANISL LNVTAGNGSP SSWLSGLGSY
TGNSYSAGTS IPDIVGKVRV DQAWGLFQVS AAAHQIRASY YNPANEWSDH PGDKWGYAVL
AALSLKNLPT GPGDSINLDA TYADGAIRYV IGGTSPNYFS IFGNNADAGA YQTLGLGTAV
DGVFVNTGGI ETTKAWGIRG AFNHNWNPNW ATSIFGSYSS VDFGSTGGAL YTAGLRAQAG
AGNTIAGNPN FNIAQIGTRT SWTPVKNLTF SGEVMWTRLD QNYSGFTGSV SPGGTKPTTV
YQFKDQDTVV GAVRVQRTF
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