Gene Rpal_3716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3716 
Symbol 
ID6411393 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3976127 
End bp3977350 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content65% 
IMG OID642713597 
Productinner-membrane translocator 
Protein accessionYP_001992691 
Protein GI192292086 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.272397 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCACA CCTCCAAACT CGCCGACATC GCGCTGCTGA TCGGCTTCGC CATCGTTGTG 
GCGCTGGGAC CGATCATCTT CACCCCGATC GGTGCCGGCT ATCCAGATCT GCTGCAGAAG
TTCGCGATCT ACGGCATCTT CGCGATCGGC TTCAACATCC TGTTCGGTCT CACCGGCTAC
CTGTCGTTCG GCCATGCCGC GTTCCTCGGC GTCGGCTCCT ACGCCGCGGT GTGGTCGTTC
AAGCTGCTGT CGATGGACCT GTTGCCGGCC GTAGCGATGT CGGTGGTGCT GGCCGGCTTG
CTGGCGCTGG CGATCGGCTT CGTCAGCTTG CGCCGCTCCG GCATCTACTT TTCGATCCTG
ACGCTTGCGT TCGCGCAGAT GTGCTACAAC ATGGCGTATT CGGTGCTGAC GCCGATCACC
AACGGCGAGA CCGGCCTGCG CGTGCTGCGC CAGGATCCGC GCTATCTCGA CGCCGCGATC
GGCTACGTCT CGCCGACGCC GTCGCTGTTC GGCATGCAGA TCACCGGCTG GACCGGGTTC
TACATCTGCG GCGCGGTGCT GGTGGCGGCG TTCGGCCTGT CGATCGCGAT CTTCCGCTCG
CCGTTCGGCA TGACGCTGCG TGCCATCAAG TCCAACCAGA ACCGGATGGG CTACACCGGC
TACTCGACCC GGCCGTATCT TCTGTCCGCC TTCGTGATCT CCGGCATGTT CGCCGGTCTC
GCTGGCGCGC TGCTCGCCGC CACCGATCCG CTGGCGGGCG CCGAGCGCAT GCAGTGGACC
GCGTCGGGCG AGGTGGTGCT GATGACTATC CTCGGCGGTG CCGGCACGCT GCTCGGCCCA
GTACTCGGCA CCGGCATCAT CAAGTACTTC GAGAACATCT TCTCGGCTTA CAACGAGGCT
CAGCTCAAGG CGATGTTCAC CTTCGTGCCC GACGGGCTGC GCGAACCGGT GGTCAAGACG
CTGAGCCTGT TCGTCGGCGA AGGCTGGCAG CTCACCCTCG GCCTGCTGTT CATGGGGGTG
GTGATCTTCC TGCCCGGCGG CGTGATGGAA GGCATCAACC GGCTGATCGG CCTGAAGCAC
ACCCCGAAGG TCAAATCGCT CGGCGACTCG CCGCAGCGTG ACGGTCTCGG CGAAATGGTG
ATCGAGGAGA TGCCGGCGCA CGACCGCACC GCCGAGATCG AGAAGAAGGC CGCCGAGAAG
AAAGCGAGAG CCACCGCGCC ATGA
 
Protein sequence
MKHTSKLADI ALLIGFAIVV ALGPIIFTPI GAGYPDLLQK FAIYGIFAIG FNILFGLTGY 
LSFGHAAFLG VGSYAAVWSF KLLSMDLLPA VAMSVVLAGL LALAIGFVSL RRSGIYFSIL
TLAFAQMCYN MAYSVLTPIT NGETGLRVLR QDPRYLDAAI GYVSPTPSLF GMQITGWTGF
YICGAVLVAA FGLSIAIFRS PFGMTLRAIK SNQNRMGYTG YSTRPYLLSA FVISGMFAGL
AGALLAATDP LAGAERMQWT ASGEVVLMTI LGGAGTLLGP VLGTGIIKYF ENIFSAYNEA
QLKAMFTFVP DGLREPVVKT LSLFVGEGWQ LTLGLLFMGV VIFLPGGVME GINRLIGLKH
TPKVKSLGDS PQRDGLGEMV IEEMPAHDRT AEIEKKAAEK KARATAP