| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3716 |
|---|
| Symbol | |
|---|
| ID | 6411393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3976127 |
|---|
| End bp | 3977350 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642713597 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001992691 |
|---|
| Protein GI | 192292086 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.272397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACA CCTCCAAACT CGCCGACATC GCGCTGCTGA TCGGCTTCGC CATCGTTGTG
GCGCTGGGAC CGATCATCTT CACCCCGATC GGTGCCGGCT ATCCAGATCT GCTGCAGAAG
TTCGCGATCT ACGGCATCTT CGCGATCGGC TTCAACATCC TGTTCGGTCT CACCGGCTAC
CTGTCGTTCG GCCATGCCGC GTTCCTCGGC GTCGGCTCCT ACGCCGCGGT GTGGTCGTTC
AAGCTGCTGT CGATGGACCT GTTGCCGGCC GTAGCGATGT CGGTGGTGCT GGCCGGCTTG
CTGGCGCTGG CGATCGGCTT CGTCAGCTTG CGCCGCTCCG GCATCTACTT TTCGATCCTG
ACGCTTGCGT TCGCGCAGAT GTGCTACAAC ATGGCGTATT CGGTGCTGAC GCCGATCACC
AACGGCGAGA CCGGCCTGCG CGTGCTGCGC CAGGATCCGC GCTATCTCGA CGCCGCGATC
GGCTACGTCT CGCCGACGCC GTCGCTGTTC GGCATGCAGA TCACCGGCTG GACCGGGTTC
TACATCTGCG GCGCGGTGCT GGTGGCGGCG TTCGGCCTGT CGATCGCGAT CTTCCGCTCG
CCGTTCGGCA TGACGCTGCG TGCCATCAAG TCCAACCAGA ACCGGATGGG CTACACCGGC
TACTCGACCC GGCCGTATCT TCTGTCCGCC TTCGTGATCT CCGGCATGTT CGCCGGTCTC
GCTGGCGCGC TGCTCGCCGC CACCGATCCG CTGGCGGGCG CCGAGCGCAT GCAGTGGACC
GCGTCGGGCG AGGTGGTGCT GATGACTATC CTCGGCGGTG CCGGCACGCT GCTCGGCCCA
GTACTCGGCA CCGGCATCAT CAAGTACTTC GAGAACATCT TCTCGGCTTA CAACGAGGCT
CAGCTCAAGG CGATGTTCAC CTTCGTGCCC GACGGGCTGC GCGAACCGGT GGTCAAGACG
CTGAGCCTGT TCGTCGGCGA AGGCTGGCAG CTCACCCTCG GCCTGCTGTT CATGGGGGTG
GTGATCTTCC TGCCCGGCGG CGTGATGGAA GGCATCAACC GGCTGATCGG CCTGAAGCAC
ACCCCGAAGG TCAAATCGCT CGGCGACTCG CCGCAGCGTG ACGGTCTCGG CGAAATGGTG
ATCGAGGAGA TGCCGGCGCA CGACCGCACC GCCGAGATCG AGAAGAAGGC CGCCGAGAAG
AAAGCGAGAG CCACCGCGCC ATGA
|
|---|
| Protein sequence | MKHTSKLADI ALLIGFAIVV ALGPIIFTPI GAGYPDLLQK FAIYGIFAIG FNILFGLTGY
LSFGHAAFLG VGSYAAVWSF KLLSMDLLPA VAMSVVLAGL LALAIGFVSL RRSGIYFSIL
TLAFAQMCYN MAYSVLTPIT NGETGLRVLR QDPRYLDAAI GYVSPTPSLF GMQITGWTGF
YICGAVLVAA FGLSIAIFRS PFGMTLRAIK SNQNRMGYTG YSTRPYLLSA FVISGMFAGL
AGALLAATDP LAGAERMQWT ASGEVVLMTI LGGAGTLLGP VLGTGIIKYF ENIFSAYNEA
QLKAMFTFVP DGLREPVVKT LSLFVGEGWQ LTLGLLFMGV VIFLPGGVME GINRLIGLKH
TPKVKSLGDS PQRDGLGEMV IEEMPAHDRT AEIEKKAAEK KARATAP
|
|---|
| |