| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3632 |
|---|
| Symbol | |
|---|
| ID | 6411308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3889656 |
|---|
| End bp | 3891716 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713512 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001992607 |
|---|
| Protein GI | 192292002 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCTC CTTCCAGTCC TGCCGTGAGT CAGAGCGAGG CGCGCTATCG TGCGCTGTTC
GAGGCGATCG ACGACGGCTT CTGCATCATC GAATTCTTCG ACGGCCCGCA CGGCCCGCTC
AGCGACTATC GCCATATCGA AGCCAACGCC GGCTACGAGA AGCAGACTGG CATTCCCAAC
ATCATCGGCC GCACCTTGCG CGATCTCGTG CCCGACGAAG CAGACGGCTG GGCGGAGCTG
TATCGCAGCG TGCTGCTGAC CGGCCGGCCG CTTCATTTCG AGCGCGAATT CCTCGCGGTG
AATCGCATCA TCGAAGTGTC GGCGACGCGG ATCGAGCCGC CGGAGCTACG CCAGGTATCG
GTTCTGTTCC GCGACATCAC CGCGCGCAAA CGTGCCGAAG CGGCGCTGCG CGATAGCGAG
CAGCTGGCAC GCGAGAACGT GCAGCGGGTG CAGCTCGCGC TCGCCGCCGG TGCGATCATC
GGCACCTGGC TGTGGGATCT GCCGAGCGAC CGCTTCACCG TCGACGAAGC ATTCGCGCGC
GCGTTCGGGC TCGATCCGGC GCTCGGCCGC GATGGCCTCA GCCTGGCGCA AATCGTCGCC
ACCGTGCATC CCGATGATCG GGCCGGACTC GCCACAGCGA TCGAGGAAGC GATCAAGCGC
GGCGGGCCTT ACGCGCATCA GTACCGGGTG CGCCGCGCCG ACGGCAAGTA CTACTGGCTC
GAGGCCAACG GGCGCGTCGA GCATGGCCCC GACGGCACGC CGCTCAGCTT CCCCGGCGTG
CTGATCGACG TCGACGACCG CCGCGCGCTG GTGGCCGAAC GCGACCGCGC CATCGCCGAG
CTGCGCGCGC TGAACGAGAC GCTGGAGCAG CGCGTCGCCG AAGCCCGCGC CGAGCTCTTG
CGCTCCGCCG AACAGCTGCG CCAGTCGCAG AAGATGGAAG CGGTCGGCCA GCTCACCGGC
GGGCTGGCGC ACGACTTCAA CAATCTGCTC GCCGGCATCT CCGGCAGCCT CGAACTGATG
AGTTCGCGGA TCCGCCAGGG CCGGGTCGGC GAGATCGAAA AATACGTGGT GGCGGCGCAA
GGCGCGGTGA AGCGTGCGGC ATCGCTGACC CACCGCCTGC TCGCTTTCGC GCGGCGCCAG
ACGCTGACGC CGACCGCCGC CAACGTCAAC CGGCTGGTCA GCGGCATGAT CGACCTGATC
CAGCGCAGCG TCGGTCCCGG CATCGACGTG CAGCATGTCG GCGCCGCCGG GCTGTGGAGC
GTGCTGGTCG ACGTGCCGCA GCTCGAAAGC GCGCTGCTCA ATCTGTGTAT CAACGCCCGC
GATGCGATGC CGAACGGCGG CAAGATCACG ATCGAAACCG GCAATCGCTG GATCGACCGG
TCGCAGTCGC GGCTGTACGA CATCCCGACC GGGCAATACG TGTCGCTGTG CGTCTCCGAC
ACCGGCACCG GCATGACGCC CGACGTGATC GCCAAAGCGT TCGATCCATT CTTCACCACC
AAGCCGATTG GCCAGGGCAC CGGGCTCGGG CTGTCGATGA TCTACGGCTT CGCGCAGCAA
TCCGGCGGCC AGGTGCGGAT CTATTCCGAG GTCGGCCAGG GCACGATGGT GTGCATCTAT
CTGCCGCGGC ACCGCGGCGA GGCCGCCGAG GACGAACGCT TCCCCGACTC CACTGAGATT
CCGTTCGCCC ACACCGGCGA GACAGTGATG GTGGTCGACG ACGAGCCCAC GGTGCGGATG
CTGGTCGCCG ACGTGCTCGA AGACCTCGGT TACACCGCAC TGGAAGCCTC TGACAGCGTC
GGCGGCCTGA AGCTGCTGCA ATCTGACGCC CGGATCGACC TGCTGGTGAC CGACGTCGGC
CTGCCCGGCG GCATGAACGG CCGCCAGCTC GCCGACGCCG CCCGCCAGAT CCGCCCCGGG
CTCAACGTGC TGTTCATCAC CGGCTTTGCC GAGAACGCAC TGCTCAACAA CGGCCAGCTC
GAACCCGGCA TGGCGGTGCT GACCAAACCG TTCGCGGTCG ACACGCTGGC GGCGCGGATC
CGCGAGCTGA TCGGGAAGTA G
|
|---|
| Protein sequence | MQPPSSPAVS QSEARYRALF EAIDDGFCII EFFDGPHGPL SDYRHIEANA GYEKQTGIPN
IIGRTLRDLV PDEADGWAEL YRSVLLTGRP LHFEREFLAV NRIIEVSATR IEPPELRQVS
VLFRDITARK RAEAALRDSE QLARENVQRV QLALAAGAII GTWLWDLPSD RFTVDEAFAR
AFGLDPALGR DGLSLAQIVA TVHPDDRAGL ATAIEEAIKR GGPYAHQYRV RRADGKYYWL
EANGRVEHGP DGTPLSFPGV LIDVDDRRAL VAERDRAIAE LRALNETLEQ RVAEARAELL
RSAEQLRQSQ KMEAVGQLTG GLAHDFNNLL AGISGSLELM SSRIRQGRVG EIEKYVVAAQ
GAVKRAASLT HRLLAFARRQ TLTPTAANVN RLVSGMIDLI QRSVGPGIDV QHVGAAGLWS
VLVDVPQLES ALLNLCINAR DAMPNGGKIT IETGNRWIDR SQSRLYDIPT GQYVSLCVSD
TGTGMTPDVI AKAFDPFFTT KPIGQGTGLG LSMIYGFAQQ SGGQVRIYSE VGQGTMVCIY
LPRHRGEAAE DERFPDSTEI PFAHTGETVM VVDDEPTVRM LVADVLEDLG YTALEASDSV
GGLKLLQSDA RIDLLVTDVG LPGGMNGRQL ADAARQIRPG LNVLFITGFA ENALLNNGQL
EPGMAVLTKP FAVDTLAARI RELIGK
|
|---|
| |