| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3605 |
|---|
| Symbol | |
|---|
| ID | 6411281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3860330 |
|---|
| End bp | 3861190 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713485 |
|---|
| Product | 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase |
|---|
| Protein accession | YP_001992580 |
|---|
| Protein GI | 192291975 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.253459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCCC GCTACGACGA ACTAATGGCC CTGAAGACGA CCGGGCAGCA ATACAGCTAC
ACCGACCGCG ACGTGATGCT GTACGCCTAT GGCGTCGGCA TGGGCGCCGA TCCGATGGAC
GAGAACGAGC TCGCCTTCGT CAACGAGGCG ACCTACACCG AGCGCCCGTT GAAGGTGGTG
CCGACCTTCG CTTCGGTCGC GGCGTGGGGC GCGGGTCCTG GTGAGATGAA TCTCAACCGG
TTGCTGGTGG TCGACGGCGA GCGCGACATC ACCTTCCACA AGCCGATGCC GGTGGCGGCG
AACATCACCG CGGATTCCAG CGTCGTCGAG GTGTACGACA AGGGCAAGGA CAAGGGCGTG
GTGATCCGTC ACCAGACCAT CCTGCGCGAC GAGGCCGGCG AGGCGCTGGC GACGCTGCTG
GCATCGCGCT TCGCCCGCGG CGACGGCGGC TTCGGCGGCC CGGCGCTGGA GCAGCCAGAG
CCGCACAAGA TGCCGGATCG TGCCCCGGAT CGCAGCGTCG ACATCTCGAC CCGGCCGGAT
CAGGCGTTGA TCTATCGCCT CTGCGGCGAC CGCAATCCGC TGCATTCCGA TCCCGAGTTC
GCGCAGAAGG CCGGCTTCCT ACGCCCGATC CTGCACGGCA TGTGCACCTA CGGCCTGACC
TGCCGCGGTG TGCTGCAGAC CTATGCCGAT TACGACGCCT CGGCCTTCAG GCAGCATGCA
GTGCGGTTCT CCTCGCCGGT GTATCCGGGC GAGACCGTCA CCATGGACAT GTGGAAGGAC
GGCAACGTGA TCTCGTTCGA AGCGCGGGTG AAGGCGCGCA ACGTCACGGT GATCAAGAGC
GGCCGGACGG TGCTGGGCTG A
|
|---|
| Protein sequence | MSARYDELMA LKTTGQQYSY TDRDVMLYAY GVGMGADPMD ENELAFVNEA TYTERPLKVV
PTFASVAAWG AGPGEMNLNR LLVVDGERDI TFHKPMPVAA NITADSSVVE VYDKGKDKGV
VIRHQTILRD EAGEALATLL ASRFARGDGG FGGPALEQPE PHKMPDRAPD RSVDISTRPD
QALIYRLCGD RNPLHSDPEF AQKAGFLRPI LHGMCTYGLT CRGVLQTYAD YDASAFRQHA
VRFSSPVYPG ETVTMDMWKD GNVISFEARV KARNVTVIKS GRTVLG
|
|---|
| |