| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3556 |
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| Symbol | |
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| ID | 6411230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3804607 |
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| End bp | 3806991 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642713434 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
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| Protein accession | YP_001992531 |
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| Protein GI | 192291926 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGACAT TTTCCCAAAG CCTTGAGCAA TCCCTCCATC GTGCGCTCGC CATCGCCAAC
GAGCGTCACC ACCAGTACGC AACCCTCGAA CATCTGCTGT TGTCTCTGGT CGACGATTCC
GACGCGGCCG CTGTGATGCG CGCCTGCAGC GTCGATCTCG ACAAGCTGCG CACCAGCCTG
GTCAACTATC TCGAAACCGA ATTCGAGAAT CTGGTGACCG ACGGCTCTGA GGACGCCAAG
CCGACCGCCG GCTTCCAGCG CGTGATTCAG CGCGCCGTGA TCCATGTGCA ATCCTCGGGG
CGTGAGGAAG TGACCGGCGC TAATGTGCTG GTTGCGATCT TCGCCGAGCG TGAAAGCCAC
GCCGCGTACT TCCTGCAGGA GCAGGACATG ACGCGCTATG ACGCGGTCAA CTACATCAGC
CACGGCATCG CCAAGCGTCC CGGCGTGTCC GAAGCTCGCC CGGTGCGTGG TGTCGACGAA
GAGACCGAGA CCAAGGGCGG CGACGACTCC AAGAAGAAGG GCGACGCGCT CGAGACCTAT
TGCGTCAACC TCAACAAGAA GGCCCGCGAC GGCAAGATCG ATCCGGTGAT CGGGCGCAAT
GCCGAGATCA GCCGCGCGAT CCAGGTGCTG TGCCGCCGGC AGAAGAACAA CCCGCTGTTC
GTCGGCGAAG CCGGCGTCGG CAAGACGGCG ATTGCGGAAG GTCTCGCCAA GCGCATCGTC
GACGGCGAGG TTCCGGAGGT GCTGTCCGCC GCCACCGTGT TCTCGCTCGA CATGGGCACG
CTGCTGGCAG GTACGCGCTA TCGCGGTGAC TTCGAAGAAC GCCTCAAGCA AGTCTTGAAG
GAACTCGAAG CGCACCCGAA CGCCATCCTG TTCATCGACG AGATCCACAC CGTCATCGGC
GCCGGTGCCA CTTCCGGCGG CGCAATGGAT GCCTCGAATT TGCTCAAGCC TGCCTTGGCT
TCGGGCACTA TTCGCTGCAT GGGCTCGACC ACCTACAAGG AATACCGTCA GCACTTCGAG
AAGGACCGCG CGCTGGTGCG GCGCTTCCAG AAGATCGATG TCAACGAACC GACCGTCGAG
GATGCGATCG CGATCCTGAA GGGGCTGAAG CCTTACTTCG AGGATTACCA CAAGCTGAAG
TACACCAACG AGGCGATCGA ATCCGCGGTG CAGCTGTCGT CGCGCTACAT CCATGACCGG
AAGTTGCCGG ACAAGGCGAT CGACGTGATC GACGAATCCG GCGCGGCGCA GATGCTGCTG
TCGGAGAACA AGCGCAAGAA GACGATCGGC ATCAAGGAGA TCGAAGCCAC GGTTGCGACC
ATGGCGCGGA TCCCGCCGAA GAGCGTGTCG AAGGACGACG CCGAGGTGCT CAAGCATCTC
GAGCAGACCC TGAAGCGCGT GGTGTTCGGT CAGGACAAAG CGATCGAGGC GCTGTCGGCG
TCGATCAAGC TGGCGCGTGC CGGCCTGCGT GAACCGGAGA AGCCGATCGG CTGCTACCTG
TTCTCGGGCC CGACCGGCGT CGGCAAGACC GAAGTCGCCA AGCAACTCGC CTCGACGCTC
GGTGTCGAGC TGCTGCGCTT CGACATGTCG GAGTACATGG AGCGGCACAC CGTGTCGCGT
CTGATCGGCG CGCCTCCCGG CTATGTCGGC TTCGACCAGG GCGGCCTGCT GACCGACGGC
GTCGATCAGC ATCCGCATTG CGTGGTGCTG CTCGACGAAA TCGAGAAGGC GCATCCGGAT
CTGTACAACG TGCTGCTGCA GATCATGGAT CATGGCCGGC TCACCGATCA CAACGGCAAG
CAGGTCAACT TCCGTAACGT GATCCTGATC ATGACCACGA ACGCGGGCGC GGCGGATCTG
GCTCGTCAGG CGTTCGGCTT CACCCGCAAC AAGCGGGAAG GTGACGACCA CGAGGCGATC
AACCGGCAGT TCGCGCCGGA ATTCCGCAAC CGTCTCGATG CGATCGTGTC GTTCGCGCAC
CTCAATGCCG ACGTCATCGG CATGGTGGTG GAGAAGTTCG TGCTGCAGCT CGAGGCTCAG
CTCGCGGACC GCGACGTCAC CATTGAGCTG TCCGAGCCCG CCAAGGCGTG GCTGGTGCAG
CACGGCTACG ACGAGCAGAT GGGCGCCCGG CCGATGGCCC GGGTGATCCA GGAGCACATC
AAGAAGCCGC TCGCCGACGA GGTGCTGTTC GGCAAGCTGA AGGGCGGCGG CCACGTCAAG
GTCGTGCTGG TCAAGGACGA CGCCGTCGCC GGCGTCGAGC TGGAGAAGAT CGGCTTCGAA
TTCCTCGACG GCCCTGTGAC GCCGAAGCCG GAAAATCTAC CCGGCAAGAA GCGTGGCGGC
TCGGCCCGCA AGGCCAAGGT GAAGGATCAG GTCGAGAAAG CCTGA
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| Protein sequence | MPTFSQSLEQ SLHRALAIAN ERHHQYATLE HLLLSLVDDS DAAAVMRACS VDLDKLRTSL
VNYLETEFEN LVTDGSEDAK PTAGFQRVIQ RAVIHVQSSG REEVTGANVL VAIFAERESH
AAYFLQEQDM TRYDAVNYIS HGIAKRPGVS EARPVRGVDE ETETKGGDDS KKKGDALETY
CVNLNKKARD GKIDPVIGRN AEISRAIQVL CRRQKNNPLF VGEAGVGKTA IAEGLAKRIV
DGEVPEVLSA ATVFSLDMGT LLAGTRYRGD FEERLKQVLK ELEAHPNAIL FIDEIHTVIG
AGATSGGAMD ASNLLKPALA SGTIRCMGST TYKEYRQHFE KDRALVRRFQ KIDVNEPTVE
DAIAILKGLK PYFEDYHKLK YTNEAIESAV QLSSRYIHDR KLPDKAIDVI DESGAAQMLL
SENKRKKTIG IKEIEATVAT MARIPPKSVS KDDAEVLKHL EQTLKRVVFG QDKAIEALSA
SIKLARAGLR EPEKPIGCYL FSGPTGVGKT EVAKQLASTL GVELLRFDMS EYMERHTVSR
LIGAPPGYVG FDQGGLLTDG VDQHPHCVVL LDEIEKAHPD LYNVLLQIMD HGRLTDHNGK
QVNFRNVILI MTTNAGAADL ARQAFGFTRN KREGDDHEAI NRQFAPEFRN RLDAIVSFAH
LNADVIGMVV EKFVLQLEAQ LADRDVTIEL SEPAKAWLVQ HGYDEQMGAR PMARVIQEHI
KKPLADEVLF GKLKGGGHVK VVLVKDDAVA GVELEKIGFE FLDGPVTPKP ENLPGKKRGG
SARKAKVKDQ VEKA
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