| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3525 |
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| Symbol | |
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| ID | 6411199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3770622 |
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| End bp | 3772271 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713403 |
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| Product | acyl-CoA dehydrogenase domain protein |
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| Protein accession | YP_001992500 |
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| Protein GI | 192291895 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00283782 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCAGC CTTCCTTCGC CACCCACGAG GTGTTCAACC AGTCGCCGCC GCTTCCGGAC
ATTGACCTGC TCGGCGCCGA CCGGCCGCTG CTCGAGGCGA TCACCTTCAA TCAGGGCGCC
AACGCTCATG TCGAGCTCGA AGCCTTCGGC AAGGCGTGGG GCATCACCGA GATGGCCGAA
CGTGGCCGCC TCGCCAACGA ATACACCCCG AAGCTGAAGA CCTTCGACGC CAAGGGCGTG
CGCCGCGATC AGGTCGAATT CCATCCGTCG TATCACGAGC TGATGGCGGA GAGCTTCAAG
GCCGGCCTGC ACAATTCGAC CTGGGACGCA CACGGCAAGC CCGCCGGCAA TGCGTCGGAA
GTGGTGCGTG CCGCGAAGTT CTACATGGCC GCCCAAGTCG AGACCGGTCA CCTCTGTCCG
GTGACGATGA CTCGCGCATC AGTGGCGGCT CTCGGCTCGC AGCCGGACCT GCTGGCTCAG
GTGATGCCGG TGCTCGGCAC CCGTCAGTAC GATCCGAGCT TCGCGCCATG GACCGCCAAG
CGCGGCATGA GCATCGGCAT GGGCATGACC GAGAAGCAGG GCGGCACCGA TGTGCGCACC
AATGCGACGC GTGCGTTCCG GGATGGCGAC GCCTACCGCA TCGTCGGCCA CAAATGGTTC
ATGTCGGCGC CGATGTGCGA TGCCTTCCTG GTGCTGGCGC AGGCCGACGA GGGACTGAGC
TGTTTCTTCA TGCCGCGGTT TCAGCCCGAC GGTTCGGTCA ACGAGATCCG TTTCCAGCGG
CTGAAGGACA AGCTCGGCAA TCGCTCCAAC GCATCGTCGG AGGTCGAGTT CACCGGTGCC
TACGCGCTGC CGGTCGGCGA GCTCGGCCGT GGTATCCGTA CTATCATCCA GATGGTGCAG
CTGACGCGGC AGGATTGCGC GATTGCGTCC GCCGGCCTGA TGCGGTCGTC GCTCGCTCAT
GCGCTGCATC ACACCCGGCA TCGCACCGTG TTTCAGAAGC GTCTTGCCGA CCACTCGCTG
ATGGTATCGG TGCTCGCCGA CATGGCGCTG CAGGTCGAGG CCTCGGTGGC GCTGGTGATG
CGGCTGTGCC GCGCGTTCGA CGAGGCGCCG AACGATCCGC TCGAAGCCGC CTATATGCGG
CTGCTGACGC CGGCGGTGAA ATACTGGATT TGCAAGTCAG CGCCGCCATT CGTGTACGAA
GCGATGGAAT GCCTCGGCGG CAATGGCTAC GTCGAGGACG GCATCCTGGC GCGGCACTAT
CGCGAGGCGC CGGTCAATGC GATCTGGGAA GGCTCTGGCA ACGTGATGTG CCTCGACGTG
CTGCGGGCGA TGTCGCGCGA GAGCGATGCC GGCACCGAGG TGCTGCAGGC GCTGATCCAG
GACACCTCGG CGCTCACCGG CGGACCGGCG GCGGCAGGTC TGATCGCACG TGCGCTGCTG
CAGGTCGACA ACGAGCGCAC CGCGCGGCTC GCGGTCGAGA TGCTGGCCAA GCTCGCCGCT
GCCGCGGCGC TGAACGAAAT CCACCCGCCG CACGCCGAAC TGTTCGCTCG CACCCGCTTG
GTGCCGGAGC CGGCAACGCT CTACGGCGCT TCCGATATTC CGACGGAGGT TGCGAAGGGA
CTATTGGGGC GCGTGCTGCC GGAGATGTGA
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| Protein sequence | MTQPSFATHE VFNQSPPLPD IDLLGADRPL LEAITFNQGA NAHVELEAFG KAWGITEMAE
RGRLANEYTP KLKTFDAKGV RRDQVEFHPS YHELMAESFK AGLHNSTWDA HGKPAGNASE
VVRAAKFYMA AQVETGHLCP VTMTRASVAA LGSQPDLLAQ VMPVLGTRQY DPSFAPWTAK
RGMSIGMGMT EKQGGTDVRT NATRAFRDGD AYRIVGHKWF MSAPMCDAFL VLAQADEGLS
CFFMPRFQPD GSVNEIRFQR LKDKLGNRSN ASSEVEFTGA YALPVGELGR GIRTIIQMVQ
LTRQDCAIAS AGLMRSSLAH ALHHTRHRTV FQKRLADHSL MVSVLADMAL QVEASVALVM
RLCRAFDEAP NDPLEAAYMR LLTPAVKYWI CKSAPPFVYE AMECLGGNGY VEDGILARHY
REAPVNAIWE GSGNVMCLDV LRAMSRESDA GTEVLQALIQ DTSALTGGPA AAGLIARALL
QVDNERTARL AVEMLAKLAA AAALNEIHPP HAELFARTRL VPEPATLYGA SDIPTEVAKG
LLGRVLPEM
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