Gene Rpal_3500 details

Gene Information

• Locus tag: Rpal_3500
• ID: 6411174
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 3747894
• End bp: 3748529
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642713379
• Product: Colicin V production protein
• Protein accession: YP_001992476
• Protein GI: 192291871
• COG category: [R] General function prediction only
• COG ID: [COG1286] Uncharacterized membrane protein, required for colicin V production

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGATTA CCATCCTTGA TCTCGTTGTT CTCGCGGTGA TGTTGGTGTC GGGGCTGCTC 
GCGATGGTGC GCGGCTTCAT GCGCGAAGTG CTGTCGATCG CGGCCTGGGG CGCCGCCGCG 
CTGGTGACGC TGTACGCATT CCAGAAGCTG ATGCCGACGG CGCGAACCTA TTTCTCGTCG 
GAGACGGTCG CCGCCGTGGT GGTGATCGCC GGCGTGTTCC TCGGCACCCT GATCATCGTG 
TCGATCATCA CGGTGCGGAT CTCGGACATG ATCCTGGATT CGCGCATCGG CGCGCTGGAT 
CGCACCCTCG GTTTTCTGTT CGGTCTCGCC CGCGGTCTTC TGATCGTGGT GGTGGCATAT 
CTGTTCTTCA ACTGGCTGGT GCCGGACAAG CAGCGCCCCG AGTGGGTCAC CAACGCCAAG 
TCGCGCACCG TGCTGCAAGG AACCGGCGAT TGGCTGATGA CGCTCTTGCC GGACGACCCT 
GAAAATACCA TCTTGAAGCG GTTCAAGAAG AACAAGCCGG AAGAAGACCA GCAGCAGACC 
GAGGATTCGG CTGCTCCCGG TGCCAATGAC GGCTACAGCA AACCCGCCCG TGACGGCCTG 
AAAAAGCTGA TAGAGGGCAA ACCGGCCACG CGCTGA 

 

Protein sequence

MPITILDLVV LAVMLVSGLL AMVRGFMREV LSIAAWGAAA LVTLYAFQKL MPTARTYFSS 
ETVAAVVVIA GVFLGTLIIV SIITVRISDM ILDSRIGALD RTLGFLFGLA RGLLIVVVAY 
LFFNWLVPDK QRPEWVTNAK SRTVLQGTGD WLMTLLPDDP ENTILKRFKK NKPEEDQQQT 
EDSAAPGAND GYSKPARDGL KKLIEGKPAT R