| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3486 |
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| Symbol | |
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| ID | 6411160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3733195 |
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| End bp | 3734544 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713365 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001992462 |
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| Protein GI | 192291857 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.121522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATTGA TCAGAGAACG ATACTTCCTT TCGAGAAATG CGGGCTTTTT GCGCGCAATC
GGCCCATCCA GTCCAGCCGT CACTTGGCTG ATCAGCGGAC CGCAGCCGCA GCCAGCCTCG
ATCGTTCGCA AGTTGCTGCT GCATACGCAG ACCAGGAAGC GAACGCTGGT CTTGGCCATC
TTCTCGACGA CGCTGATGGC GGCGGTTGTC GCGGCCACCA CCGATGCAAT CTGGGCGATC
GTCTGGCTCG CCGTCGAGCT CGGGTTCGGC GCAGCACGCT ACGCGGCGCT CGCTGCATTG
CAGCGCGATG AAGCTGCCGG CCGCCCCGGC AATGCGGTCC TGCCGCTCTA TCTCGGCATG
TCCTGGGCGA TCTGCTACGG AATCGGTTGC GGGCTTTGCG CCATCTCCGG GGAATGGCTG
CTGATTTTGA TGGCCGGCAT CTTTATCTCC GGCCTTGCGG GCGGGATCTC CTCGCGCAAC
TCGGGCACGC CACGGTACGG CATCACACTG ATCTATCTGC TCGGCACGCC CTACAGCGTG
GCGATGGTGC TGTCGCCGCT CCCCTATATG TACATTGTCG GACTGCTCGT TCCGATCTGG
GGCTTCGGCA TGGCTCTCGT GCTGCTCGAG AATTACGAGG TGCTGCTCAA CCTGTTTCTC
TCCGAGCGGA AGAATCGCCG GCTGGCCAAC TACGATTCTC TCACTGGGCT CCCCAACCGG
GTGATGAAGC GGCAGCGGTT CGAACGGTTG CTGCGCGGCG CGGATGCGTC CGCCGCCGCA
CCTCTCACCG TGTTCTGTCT GGACCTCGAC GGCTTCAAGA GCGCCAACGA CCGGTTCGGT
CATGCCGCGG GCGATGCCGT GCTCGTTTCG GTCGCTGAGC GGCTGCGCAG CAGCGTCCGC
GAGCAGGATC AGGTGTTCCG TGTCGGCGGC GACGAATTCG TGGTGCTCCT GCCCGGAACA
CGAACGGACG ATGCGGCTCC GGTTGCGCAG CGAATCATCG CCGCGATTGC CGAGCCGTTC
GAACTGGCAG GCCATGGCCG GCTCGACATC GGCGTCAGCA TCGGCGCGGC AACCTTCCCG
ACGGATGGCT CGACCGTGGA TGACCTGCTG CGGGCCGCCG ATATTGCGAT GTATGAGGCC
AAACGGCAGG GAAAGGGCCG GTTCGTGGCG GCCGGCCGCA ACGGCATGGC GCCCCAACAA
CCAGCACCCG CTACCGCCAA CGTAACTCCG GCCTCGAGAG TGCGGGCCCC CGAACCGGCC
GGCCTATGGT CGAAACTGCA GCTTCCGTCC CTTGCCAAGG CGGCCGAAAT CCGTATAACG
GCGCATCCGC AGATCCCGGC CGGGAGCTGA
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| Protein sequence | MRLIRERYFL SRNAGFLRAI GPSSPAVTWL ISGPQPQPAS IVRKLLLHTQ TRKRTLVLAI
FSTTLMAAVV AATTDAIWAI VWLAVELGFG AARYAALAAL QRDEAAGRPG NAVLPLYLGM
SWAICYGIGC GLCAISGEWL LILMAGIFIS GLAGGISSRN SGTPRYGITL IYLLGTPYSV
AMVLSPLPYM YIVGLLVPIW GFGMALVLLE NYEVLLNLFL SERKNRRLAN YDSLTGLPNR
VMKRQRFERL LRGADASAAA PLTVFCLDLD GFKSANDRFG HAAGDAVLVS VAERLRSSVR
EQDQVFRVGG DEFVVLLPGT RTDDAAPVAQ RIIAAIAEPF ELAGHGRLDI GVSIGAATFP
TDGSTVDDLL RAADIAMYEA KRQGKGRFVA AGRNGMAPQQ PAPATANVTP ASRVRAPEPA
GLWSKLQLPS LAKAAEIRIT AHPQIPAGS
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