| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3484 |
|---|
| Symbol | |
|---|
| ID | 6411158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3731213 |
|---|
| End bp | 3731950 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713363 |
|---|
| Product | 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| Protein accession | YP_001992460 |
|---|
| Protein GI | 192291855 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0117472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGATC TGACAGGCAG AACCGCGCTG GTCACCGGCG CAACCGGCGG CATCGGCGGC
GCGATCGCCC AGGCGCTGCA CGGCCAGGGC GCCACCGTGG CGATCTCCGG CACGCGGCGC
GAGGCGCTCG ACGCGCTGGC CGCCAAGCTC GGCGAACGCG TGCACGTGCT GCCTTGCAAT
CTGTCGGACG CGGCGGACGT CGAAGCGCTG GTGCCGGCTG CGGCCGAAGC CATGGGCGGG
CTCGACATCC TCGTATGTAA CGCAGGTATC ACCCGCGACA ATCTGTTCGT GCAATTGCGC
GACGAGGATT GGGACGAGGT GATCAAGGTC AACCTCACGG CGACCTTCCG GCTGACGCGC
GCTGCCACCA AGCTGATGAT GCGCAAGAAG TTCGGCCGCA TCATTGCGAT CACTTCGGTG
GTCGGCGTCA CCGGCAATCC GGGGCAGGGC AACTACACGG CCTCGAAGGC GGGCTTGATC
GGCATGATCA AGACGCTCGG CGCCGAATAC GCCAAGCGCA ACGTCACGGC GAACTGCATT
GCGCCAGGCT TCATCGCGAC GCCGATGACC GACGTTCTCA ATGACAAGCA GCGCGAGGCG
ATTCTCGGCA AGGTGCCGGC CGGCCGGCTC GGCACGCCGG ACGACATTGC GGCTGCGGCG
GTTTATCTCA GTTCGAATGA GGCCGCCTAC GTCACCGGTC AGACCATTCA CGTCAACGGC
GGGATGGCGA TGATCTGA
|
|---|
| Protein sequence | MFDLTGRTAL VTGATGGIGG AIAQALHGQG ATVAISGTRR EALDALAAKL GERVHVLPCN
LSDAADVEAL VPAAAEAMGG LDILVCNAGI TRDNLFVQLR DEDWDEVIKV NLTATFRLTR
AATKLMMRKK FGRIIAITSV VGVTGNPGQG NYTASKAGLI GMIKTLGAEY AKRNVTANCI
APGFIATPMT DVLNDKQREA ILGKVPAGRL GTPDDIAAAA VYLSSNEAAY VTGQTIHVNG
GMAMI
|
|---|
| |